PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000634630
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 114aa    MW: 12509 Da    PI: 10.7836
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000634630genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.91.1e-123070247
            AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaai 47
                   +y+GVr ++ +g+++A Ird ++    ++r++lg+fg  ee  + a+
  MDP0000634630 30 RYRGVRKRP-WGQFAAKIRDlWK----KTRVWLGTFGP-EESSRSAD 70
                   6********.************3....5**********.99999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.9E-53080IPR001471AP2/ERF domain
PfamPF008473.6E-73070IPR001471AP2/ERF domain
PROSITE profilePS5103212.8663069IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-143066IPR001471AP2/ERF domain
SuperFamilySSF541715.49E-93066IPR016177DNA-binding domain
PRINTSPR003671.8E-73142IPR001471AP2/ERF domain
PRINTSPR003671.8E-75369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
MRRGRGAATR PAAPPAESTG SRPCIGKEVR YRGVRKRPWG QFAAKIRDLW KKTRVWLGTF  60
GPEESSRSAD SGGSSSAPSS SSEHPPGEKY RKYLENIENI AILSTISRYL DDN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.302122e-91fruit
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways and could also regulate other AtERFs. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:9756931}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), ethylene and Alternaria brassicicola (locally and systemically). Moderate induction by wounding or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate slightly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by ethylene, exogenous abscisic acid (ABA), cold and heat stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324772e-88GU732477.1 Malus x domestica AP2 domain class transcription factor (AP2D53) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009361043.11e-27PREDICTED: ethylene-responsive transcription factor 3-like
SwissprotO803393e-16ERF82_ARATH; Ethylene-responsive transcription factor 3
TrEMBLA0A498IL659e-21A0A498IL65_MALDO; Uncharacterized protein
TrEMBLD5L0Y99e-21D5L0Y9_MALDO; AP2 domain class transcription factor
TrEMBLD5L1377e-21D5L137_MALDO; AP2 domain class transcription factor
STRINGXP_009361043.14e-27(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15712710
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.12e-16ERF domain protein 12
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]