PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000633218
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 366aa    MW: 39785.4 Da    PI: 6.9187
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000633218genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.81.8e-20184233255
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+g
  MDP0000633218 184 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAAXAYDKAAYKLRG 233
                    59******9.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.14E-20183243No hitNo description
Gene3DG3DSA:3.30.730.104.3E-32184242IPR001471AP2/ERF domain
SMARTSM003802.1E-37184247IPR001471AP2/ERF domain
PROSITE profilePS5103223.209184241IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-23184242IPR016177DNA-binding domain
PRINTSPR003674.4E-11185196IPR001471AP2/ERF domain
PfamPF008471.1E-13185233IPR001471AP2/ERF domain
PRINTSPR003674.4E-11207223IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MATXMDFYSS RAAFQSSSDP FGGELMEALE PFMKSASSSP PPPSSLPTTA TSPPSFAPFL  60
PSFPSXSSSY DFLSSSNQPS FYDYGCSTSS MTQLFSDGLF EKHHQQLPSI GLNHLTPSQI  120
HQIQXXIQSQ SQSQSQPQQT QISWENHHQQ VSQPSSHTLS FLGPKPVXMK QVGSSGSPPK  180
PTKLYRGVRQ RHWGKWVAEI RLPKNRTRLW LGTFDTAEEA AXAYDKAAYK LRGDFARLNF  240
PHLRHNGSVV GGEFGEYKPL HASVDAKLQA ICEGLAETQK QGKAAKPAKR SSAAXSRQPA  300
PETLAVKVET SSPVMTDSEG SAGSSPLSDL TFGDSTEPWE NSGASESTAV LEKYPSEIDW  360
ASIFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-20183241160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.3210.0bud| cell culture| fruit| leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in roots and leaves. Also detected in flowers and stems. {ECO:0000269|PubMed:9192694}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324460.0GU732446.1 Malus x domestica AP2 domain class transcription factor (AP2D22) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001315885.10.0ethylene-responsive transcription factor RAP2-13-like
SwissprotQ8H1E42e-95RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A1L4FMM60.0A0A1L4FMM6_9ROSA; DREB6.2
STRINGXP_008375600.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105732109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.18e-72related to AP2 4
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  4. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  5. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]