PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000618650

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

NAC

Protein Properties

Length: 498aa MW: 56354.8 Da PI: 7.1293

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000618650	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	111.8	7.8e-35	46	188	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk........s 80 lp+G++F+Ptd+el+ e+L +kve+k+ ++++ i+ +i +++P++Lp v+ + + +fF++ +k+y+tg+rk+r+++ + MDP0000618650 46 LPAGVKFDPTDQELI-EHLXAKVEAKDskshplIDEFIPtIEGEdGIXYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKIQtecdlqggE 139 799**********.99**9996665443333333666646******.555666799**************733345555447 PP NAM 81 gyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l MDP0000618650 140 TRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 188 78********.999*******5547999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.11E-37	42	207	IPR003441	NAC domain
PROSITE profile	PS51005	33.154	46	207	IPR003441	NAC domain
Pfam	PF02365	4.0E-16	47	188	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 498 aa Download sequence Send to blast
MSKSNLGSIR SSDLIDAKLE EHQMCGSKQC PGCGHKFEGK PDWLGLPAGV KFDPTDQELI 60 EHLXAKVEAK DSKSHPLIDE FIPTIEGEDG IXYTHPEKLP GVTRDGLSRH FFHRPSKAYT 120 TGTRKRRKIQ TECDLQGGET RWHKTGKTRP VMVNGKQKGC KKILVLYTNF GKNRKPEKTN 180 WVMHQYHLGQ HEEEKEGELV VSKIFYQTQP RQCNWSDRAS ATTGEGSSDI MATTSRRDSG 240 SGSCSSKEIL PSHXHRDHDQ MAATAVAAVA XAAPISSYSG IDIHQXKSDH FSFGPFRKSF 300 DEVGIGGEAS TARERPETGT CEEIQEHHQR SVAVQRHHHH HHHMGHELVP DHQQQHQHEH 360 QQQQQQQLHH HQQIATATAF HINRPSHPIS TIISPSPLHH TSIILDQDSY SRLXLQNENF 420 QAQQQQQQQH QQQQHHNQQQ HHKMGDRSAS GLEELIMGCT SSSSNIKEES SMPNPQEAEW 480 MKYSSFWPDP DNPDHHG*

Sequence ? help Back to Top

Protein Sequence Length: 498 aa Download sequence Send to blast

MSKSNLGSIR SSDLIDAKLE EHQMCGSKQC PGCGHKFEGK PDWLGLPAGV KFDPTDQELI  60
EHLXAKVEAK DSKSHPLIDE FIPTIEGEDG IXYTHPEKLP GVTRDGLSRH FFHRPSKAYT  120
TGTRKRRKIQ TECDLQGGET RWHKTGKTRP VMVNGKQKGC KKILVLYTNF GKNRKPEKTN  180
WVMHQYHLGQ HEEEKEGELV VSKIFYQTQP RQCNWSDRAS ATTGEGSSDI MATTSRRDSG  240
SGSCSSKEIL PSHXHRDHDQ MAATAVAAVA XAAPISSYSG IDIHQXKSDH FSFGPFRKSF  300
DEVGIGGEAS TARERPETGT CEEIQEHHQR SVAVQRHHHH HHHMGHELVP DHQQQHQHEH  360
QQQQQQQLHH HQQIATATAF HINRPSHPIS TIISPSPLHH TSIILDQDSY SRLXLQNENF  420
QAQQQQQQQH QQQQHHNQQQ HHKMGDRSAS GLEELIMGCT SSSSNIKEES SMPNPQEAEW  480
MKYSSFWPDP DNPDHHG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	3e-13	44	188	13	140	Stress-induced transcription factor NAC1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269\|PubMed:25265867}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00460	DAP	Transfer from AT4G29230	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF198114	0.0	KF198114.1 Malus hupehensis NAC domain protein (NAC16) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008337617.2	0.0	NAC domain-containing protein 75 isoform X1
Refseq	XP_028950744.1	0.0	NAC domain-containing protein 75 isoform X1
Swissprot	Q9M0F8	0.0	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	A0A498HXH6	0.0	A0A498HXH6_MALDO; Uncharacterized protein
STRING	XP_008337617.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4520	34	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	1e-141	NAC domain containing protein 75

Link Out ? help Back to Top
Phytozome	MDP0000618650

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]