PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000617459
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family TCP
Protein Properties Length: 264aa    MW: 29189.7 Da    PI: 11.3122
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000617459genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP115.75.9e-361502433102
            TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaaks 97 
                    ++k++++++hTkv+gR+RR+R+ a+caar+F+L++e G+++d++tieWLlqqa +ai++ tgt++++a+++  + s +ss+s+ s++       +s
  MDP0000617459 150 VAKRSTKDRHTKVEGRGRRIRMAATCAARVFKLTREFGHKSDGETIEWLLQQARHAIIATTGTGTIPANFStLNISLRSSGSTLSAP-------PS 238
                    689*****************************************************************9997777777777744444.......22 PP

            TCP  98 kksqk 102
                    k++++
  MDP0000617459 239 KSAPH 243
                    22233 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.4E-35154239IPR005333Transcription factor, TCP
PROSITE profilePS5136924.322155209IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MVANRWLRPE ARDLSNVRCH KGRRRELRVE AEARRDAGGA AFGSEKGAQK TKKKNRRKQL  60
SCLAGEGCFA QRENGKERQT DWQIAKDLTG AERARREEEK QSWLLSLAHL GFESTHSSPR  120
TIETRQIGRH IPLSFHALPP SAPAAPATQV AKRSTKDRHT KVEGRGRRIR MAATCAARVF  180
KLTREFGHKS DGETIEWLLQ QARHAIIATT GTGTIPANFS TLNISLRSSG STLSAPPSKS  240
APHSFPXALA LAHHPHYDEG FAH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15358KNRRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.286570.0leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60773050
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.11e-44TCP family protein