PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000617021 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | G2-like | ||||||||
Protein Properties | Length: 949aa MW: 105804 Da PI: 6.802 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 97.4 | 1e-30 | 652 | 705 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 rlrWtp+LH +F++ave+LGG+e+AtPk +l+lm+vkgL+++hvkSHLQ+YR+ MDP0000617021 652 SRLRWTPDLHLCFIRAVERLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRS 705 69***************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF01103 | 2.8E-25 | 193 | 520 | IPR000184 | Bacterial surface antigen (D15) |
PROSITE profile | PS51294 | 12.73 | 648 | 708 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-28 | 648 | 706 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.76E-14 | 649 | 707 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.2E-22 | 652 | 707 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 8.7E-9 | 653 | 704 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0009536 | Cellular Component | plastid | ||||
GO:0019867 | Cellular Component | outer membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 949 aa Download sequence Send to blast |
MAKSDSETQN PKDDRDEEPP SNVDGTVDGD PEPDEMDDEI DEEEDEDDDE EPPLPRKPLS 60 QEARLRAEKS KLENLVQRMS TERVDLRVHD VLIKGNTKTK EHLIEAELAG IKKATTMQEL 120 LEAAAIANAK LQQLEIFDAV RITLDSGPPE LPGTTNVIVE VVETKSPISG XIGAYTKPAA 180 RSWTAEGTLK FKNLLGYGDL WDSSLAYGPN QTSELSAGLF LPRFKGFVTP MTARAFLLSQ 240 DWLEFSSYKE RMMGLSLGLI SSKHHDLAYN LGWRTLADPS QLASRSIRRQ LGHELLSSIK 300 YTFKIDRRNS PLRPTRGYSF VSTSHIGGIA PDHRSTRFLR QEFDLRYAVP LGFYHAALNF 360 GISAGVIFPW GSGFLNKPSS LPERFFLGGD FSPVCTVGGP TTVWGFKTRG LGPTEPRRHV 420 GDNSNEENSE SPGRDSVGGD LAVSAFADIS FDLPLRWLKQ HGVHGHIFAG AGNLAKLTEN 480 EFRNFSAPKF LQSFRSSVGA GIVVPTKFFR LEEAWCFDDA HKKKNNMRFP VLEHINTAIK 540 TVEKILKLEK KSEKQTFKYL ISWDTLDAVS DINRLGMKSE STSIEEVSKS SPSTSKKEYD 600 HEDDEGEEDE VDEEGLQLRN NGGSSSNSTI EENHEKKGAS GSVRQYVRSK TSRLRWTPDL 660 HLCFIRAVER LGGQERATPK LVLQLMNVKG LSIAHVKSHL QMYRSKKTED HNQVVTDQAG 720 FFMEGGDNQL YNLTQLSMLQ SFNRWPSSRL RYGANDHSSW RGRHHQIYSP YSSSRTTALL 780 DHNTRNIGLY GSVAERILGS NNTNIMSTSA NQLYTNLPSP SHGQRNQIPW DELCQTMIHR 840 PCQDHHSWTA VIRDHQGQNM LKRKGLDTDN CDLDLNLSLK VPPKHDHGFG KGLQCGDDNH 900 QKLLMGCSLS LTLSSSSSSK LGVKKLEGTG YGDGKHGKNM ASTLDLTL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 1e-17 | 652 | 707 | 2 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-17 | 652 | 707 | 2 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-17 | 652 | 707 | 2 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-17 | 652 | 707 | 2 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.25867 | 1e-156 | fruit| leaf |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008369284.2 | 0.0 | sorting and assembly machinery component 50 homolog | ||||
TrEMBL | A0A498JM49 | 0.0 | A0A498JM49_MALDO; Uncharacterized protein | ||||
STRING | XP_008369284.1 | 0.0 | (Malus domestica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38300.1 | 3e-44 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000617021 |