PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000616839
Common NameC2H2L10
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 320aa    MW: 36216.5 Da    PI: 6.0608
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000616839genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.00025727323
                   ETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                   C++C+k+Fs+   +  H+r+H
  MDP0000616839  7 CKICNKRFSNGKAMGGHMRSH 27
                   *******************99 PP
2zf-C2H214.20.00013180202123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ykC+ C+k+F++   L  H  +H
  MDP0000616839 180 YKCETCDKVFRSYQALGGHRASH 202
                    9***********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139125.2E-9429IPR007087Zinc finger, C2H2
SuperFamilySSF576672.22E-8427No hitNo description
PROSITE profilePS5015710.138532IPR007087Zinc finger, C2H2
SMARTSM003550.078527IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280727IPR007087Zinc finger, C2H2
SuperFamilySSF576672.22E-8175202No hitNo description
PROSITE profilePS501579.93180202IPR007087Zinc finger, C2H2
PfamPF139122.4E-11180204IPR007087Zinc finger, C2H2
SMARTSM003550.012180202IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280182202IPR007087Zinc finger, C2H2
PfamPF139121.2E-8240263IPR007087Zinc finger, C2H2
PROSITE profilePS501579.64241263IPR007087Zinc finger, C2H2
SMARTSM003550.87241263IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280243263IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MEKHRICKIC NKRFSNGKAM GGHMRSHLAK LPLPPKPQSP PQQQQQHHQL SNSPEXSSLP  60
FSTSNRGMHS SLDSALVHDD SDSESHPRNP TRRRSKRRRK VIGKSSPLPF EAEQVSSVSD  120
TFSTEDVARC LIMLSMDKWE XXKVKNGVXE SXEKEEEDES DSGGRSDFRI KDRVRSQGKY  180
KCETCDKVFR SYQALGGHRA SHKKTIKTQV FDDYEEEEDE DFEEXDGQDG NLAVVENHRT  240
FECSVCFRRF DSGQALGGHK KVHYYNNLTN NAPARNVNXS SSSTNFVDNL VIDLNLPAPE  300
EEXEEDEEVS QVEXSTVSD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001315887.11e-176zinc finger protein ZAT9-like
TrEMBLD9ZIS01e-175D9ZIS0_MALDO; C2H2L domain class transcription factor
STRINGXP_008376003.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.12e-35C2H2-like zinc finger protein