PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000614531
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ZF-HD
Protein Properties Length: 351aa    MW: 37574.8 Da    PI: 7.3342
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000614531genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer104.85.4e-33117173360
    ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                     vrY+eClkNhAa++Gg+++DGCgEfmps geegt +alkCaAC+CHRnFHR+ev+ e
  MDP0000614531 117 VVRYRECLKNHAANIGGNVFDGCGEFMPS-GEEGTLEALKCAACDCHRNFHRKEVDGE 173
                    69**************************9.999*********************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257741.0E-23117171IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.8E-30118170IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.4E-30119170IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.979120169IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466893.7E-19254317IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.1E-30255317IPR009057Homeodomain-like
TIGRFAMsTIGR015658.0E-29256313IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MDFRAQDNEM RTSGSLSYAH LSAKESSPSS AAAAPAADHQ QKRRLGIHNG TGSYGSATAP  60
HHQHQTLDNH NPAALPLQPL IRDPDPDRAL SGTPVAPHGA RLSGSGGGGG PKSLGKVVRY  120
RECLKNHAAN IGGNVFDGCG EFMPSGEEGT LEALKCAACD CHRNFHRKEV DGETAAFSPG  180
SRRSSIMLTP LQLPPPLPSP SSALHHHHHH HQKYSMPPIV QPVNMAFGSG GGGTESSSED  240
LNAFEGGAVP PFALSKKRFR TKFTVEQKER MMEFAERVGW RIQKQDEEEV ERFCAEVGVK  300
RQVLRVWMHN NKNTIKKQGD VTATTNAIAT GLSFDNVEGE GGEGAAAAED *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-262553141675ZF-HD homeobox family protein
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Binds DNA at 5'-ATTA-3' consensus promoter regions. Regulates floral architecture and leaf development. Regulators in the abscisic acid (ABA) signal pathway that confers sensitivity to ABA in an ARF2-dependent manner. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:21059647, ECO:0000269|PubMed:21779177}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00238DAPTransfer from AT1G75240Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by abscisic acid (ABA) and ARF2. {ECO:0000269|PubMed:21779177}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008357202.20.0zinc-finger homeodomain protein 2-like
RefseqXP_028950867.10.0zinc-finger homeodomain protein 2-like
RefseqXP_028950868.10.0zinc-finger homeodomain protein 2-like
RefseqXP_028950869.10.0zinc-finger homeodomain protein 2-like
RefseqXP_028950870.10.0zinc-finger homeodomain protein 2-like
SwissprotQ9FRL51e-68ZHD5_ARATH; Zinc-finger homeodomain protein 5
TrEMBLA0A498HNU60.0A0A498HNU6_MALDO; Uncharacterized protein
STRINGXP_008388052.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75240.17e-64homeobox protein 33