PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000612884 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | ERF | ||||||||
Protein Properties | Length: 153aa MW: 16909.4 Da PI: 7.6616 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 37.8 | 4.8e-12 | 21 | 59 | 11 | 52 |
AP2 11 krgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkk 52 + grW A+I g +k+ +lg+fgt eeAa+a++ a+ k MDP0000612884 21 SMGRWQARIGX----GtGNKHLYLGTFGTQEEAAEAYDIAAIK 59 68******999....4446*********************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 12.26 | 7 | 74 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.7E-7 | 15 | 78 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.7E-7 | 21 | 59 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-10 | 22 | 68 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.7E-10 | 22 | 60 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.92E-15 | 23 | 68 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
MEEKAARAYG LAALKYWDIT SMGRWQARIG XGTGNKHLYL GTFGTQEEAA EAYDIAAIKC 60 PRTTPTSNPT MDYQTADSEH VLKRSRPFEI TDEXNNLPVN MLPVAYPNQS HGQSSYSSND 120 LPKSVVMTLR PGSTVKSMDF HPMQQIXLLG KL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription corepressor of Zinc finger transcription factors GAF1/IDD2 and ENY/IDD1 in regulation of gibberellin homeostasis and signaling. {ECO:0000269|PubMed:25035403}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028955356.1 | 1e-88 | topless-related protein 4-like isoform X6 | ||||
Refseq | XP_028955357.1 | 1e-88 | topless-related protein 4-like isoform X7 | ||||
Refseq | XP_028958283.1 | 2e-89 | topless-related protein 4-like isoform X1 | ||||
Refseq | XP_028958284.1 | 2e-89 | topless-related protein 4-like isoform X1 | ||||
Refseq | XP_028958285.1 | 2e-89 | topless-related protein 4-like isoform X1 | ||||
Refseq | XP_028958286.1 | 2e-89 | topless-related protein 4-like isoform X1 | ||||
Swissprot | Q27GK7 | 4e-32 | TPR4_ARATH; Topless-related protein 4 | ||||
TrEMBL | A0A498KK49 | 6e-47 | A0A498KK49_MALDO; Uncharacterized protein | ||||
STRING | XP_008353570.1 | 1e-91 | (Malus domestica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 3e-16 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000612884 |
Publications ? help Back to Top | |||
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