PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000608975 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | C2H2 | ||||||||
Protein Properties | Length: 197aa MW: 22259.7 Da PI: 6.2287 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12 | 0.00063 | 22 | 44 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ C++ F + L H+++H MDP0000608975 22 YACSFCKREFXSAQALGGHMNVH 44 89*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.21E-6 | 19 | 48 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 0.001 | 20 | 47 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.198 | 22 | 49 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 4.3E-6 | 22 | 45 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 24 | 44 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MDCINFFEGE NLCDISWATR NYACSFCKRE FXSAQALGGH MNVHRRDRAR LRLLPHTLSS 60 EMCPQNPNPS SYFATSSSSS LSSCHSLFSP SLRTRVSAPS SASSMDENKK LRYDYWPENH 120 FPDLIPKKGM GGGVEHEAGH TFKGFAQRDD EYFNKIDLEK ENNIIRVDLG LDLDLDIGLL 180 KDHKEEVDLE LRLGHL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028959495.1 | 1e-144 | transcriptional regulator SUPERMAN-like | ||||
TrEMBL | A0A498JQT9 | 1e-143 | A0A498JQT9_MALDO; Uncharacterized protein | ||||
STRING | XP_009354969.1 | 7e-97 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16963 | 6 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23130.1 | 2e-18 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000608975 |