PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MDP0000607144 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
|
||||||||
Family | ARR-B | ||||||||
Protein Properties | Length: 700aa MW: 78080.1 Da PI: 7.1816 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 87.3 | 1.4e-27 | 204 | 257 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ LH++Fv av+qL G++kA+Pk+il+lm+v+ Lt+e+v+SHLQkYRl MDP0000607144 204 KPRVVWSVXLHRKFVAAVNQL-GIDKAVPKKILDLMNVEKLTRENVASHLQKYRL 257 79*******************.********************************8 PP | |||||||
2 | Response_reg | 78 | 3.4e-26 | 20 | 128 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTE CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGa 94 vl vdD+p+ ++ll+ +l++ +y +v++++++ al ll+e++ +Dl++ D+ mp+mdG++ll+ e++lp+i+++ +g+ +++ + + Ga MDP0000607144 20 VLAVDDDPICLKLLEALLRRCQY-HVTTTSHAXTALXLLRENKdkFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSVNGDHKLVMKGITHGA 113 799********************.***************888888*******************87754.558*********************** PP SEEEESS--HHHHHH CS Response_reg 95 kdflsKpfdpeelvk 109 d+l Kp+ +e+l + MDP0000607144 114 CDYLLKPVRIEQLKN 128 ************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 1.9E-164 | 1 | 636 | IPR017053 | Response regulator B-type, plant |
Gene3D | G3DSA:3.40.50.2300 | 2.0E-41 | 17 | 169 | No hit | No description |
SuperFamily | SSF52172 | 9.68E-35 | 17 | 140 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 5.3E-31 | 18 | 130 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 41.503 | 19 | 134 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 2.9E-23 | 20 | 128 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 4.72E-26 | 21 | 134 | No hit | No description |
SuperFamily | SSF46689 | 8.06E-19 | 201 | 261 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 10.771 | 201 | 260 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-29 | 202 | 262 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.9E-24 | 204 | 257 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0031537 | Biological Process | regulation of anthocyanin metabolic process | ||||
GO:0048367 | Biological Process | shoot system development | ||||
GO:0080022 | Biological Process | primary root development | ||||
GO:0080036 | Biological Process | regulation of cytokinin-activated signaling pathway | ||||
GO:0080113 | Biological Process | regulation of seed growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 700 aa Download sequence Send to blast |
MTVERVLDEP RDQFPIGMRV LAVDDDPICL KLLEALLRRC QYHVTTTSHA XTALXLLREN 60 KDKFDLVISD VHMPDMDGFK LLELVGLEMD LPVIMLSVNG DHKLVMKGIT HGACDYLLKP 120 VRIEQLKNIW QHVIRRKKVD SKDQNSGNQD KSAGCGEGGV GSVGTGNSDQ NAKLNKKRKD 180 QNDGEDEDHD EDEYENDDPS TQKKPRVVWS VXLHRKFVAA VNQLGIDKAV PKKILDLMNV 240 EKLTRENVAS HLQKYRLYLK RISCVANQQA NMVAALGTSD SSYLRTASMN GVGNYHTLTG 300 PAQFHNNGYR SFPPSGMIGR LNTPAGVGLH CLPSSGMFQL GHAQNPSNAI NDQPVMFPGN 360 RNGNMLPPHL ELDQQHNRGS TYGAPIYPDS SGFTDTKVTN RSNDPFGLTD NTMLRHTRDS 420 EVGRNHVMQS SVSMPSLKPV LAXPFLDHGR LNDNWPTAAQ PSAFRSNSFS AVDSFKQPTL 480 LDSRIGSQIP ASTMSNNSDP TINNDLFLGW DEPKQDSPFQ SDVMCSSMNN LMPVNDNVAP 540 SHQNLDARSS AFQRNSEFNL IGQPNFLDPL LMNYDGVEIS TMDAPLKLKQ QGYLMDQRKP 600 QGVYVPHNAG SLDELVSSMI KQVRSFSTGL FYCQIHKHPV RPACWPDXKN SWAGWWTRQN 660 EIISHCLPAA YMYRLQLLGR LLAHLHAINF LSYGQILVH* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 6e-25 | 200 | 263 | 1 | 64 | ARR10-B |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Mdo.8044 | 0.0 | bud| fruit| leaf| root| stem |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008377662.2 | 0.0 | two-component response regulator ARR12 | ||||
Swissprot | A2X1N2 | 1e-142 | ORR24_ORYSI; Two-component response regulator ORR24 | ||||
TrEMBL | A0A498J7D6 | 0.0 | A0A498J7D6_MALDO; Two-component response regulator | ||||
STRING | XP_008377662.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF956 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G25180.1 | 1e-119 | response regulator 12 |
Link Out ? help Back to Top | |
---|---|
Phytozome | MDP0000607144 |