PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000603926
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 300aa    MW: 33438.6 Da    PI: 4.7467
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000603926genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH376.1e-12189232654
                    HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
            HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                     ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  MDP0000603926 189 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMKEL 232
                    589*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.491183232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.77E-16186251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-12189238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-9189232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.98E-5190236No hitNo description
Gene3DG3DSA:4.10.280.101.1E-15190251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MELSQHGFLE ELLLAPRXDX WSSYSSGLNE LLPINGWSFD SFEENPVLVS SINPQFVGFS  60
TTQPTFEECP FTTTTTASSS SXPFVVGGLC AVPEINDTTT PPPFPPQDHR DYPSMVEDEE  120
FGNFLGCENH SSCLELEESK NNNISTCKVE MDQEAADHHF XPSAFTMGLC GEKRSSKSKK  180
LEGQPSKNLM AERRRRKRLN DRLSMLRSIV PKISKMDRTS ILGDTIDYMK ELLERINKLQ  240
EGVEEGTNQI SLMGTSKDLN PSEVLVRNSP KGAEQRDLLS PQDIKQALFR NAGYGGRCL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1191198ERRRRKRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.11230.0fruit| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6894161e-116KP689416.1 Prunus pseudocerasus isolate Unigene13488 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008357956.20.0transcription factor bHLH93-like isoform X2
TrEMBLA0A498HVR01e-174A0A498HVR0_MALDO; Uncharacterized protein
STRINGXP_008357954.11e-175(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118634103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.11e-46beta HLH protein 93