PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000603846
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NF-X1
Protein Properties Length: 1227aa    MW: 133720 Da    PI: 8.0077
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000603846genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X1193.2e-06414430319
       zf-NF-X1   3 kHkCqklCHeGpCppCp 19 
                    +H+C+++CH GpC+pC+
  MDP0000603846 414 RHRCERTCHVGPCDPCQ 430
                    8***************6 PP
2zf-NF-X1261.9e-08534551118
       zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                    CG+H+Cq+ CH+G+CppC
  MDP0000603846 534 CGMHQCQEVCHTGDCPPC 551
                    ****************** PP
3zf-NF-X117.21.1e-05630647118
       zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                    CG+H+C++lCH G CppC
  MDP0000603846 630 CGQHSCESLCHSGHCPPC 647
                    ****************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500168.787242303IPR019787Zinc finger, PHD-finger
SuperFamilySSF578506.09E-7244304No hitNo description
PROSITE patternPS013590245300IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500899.391245301IPR001841Zinc finger, RING-type
CDDcd060081.78E-5334395No hitNo description
SMARTSM004380.023357375IPR000967Zinc finger, NF-X1-type
PfamPF014229.2359374IPR000967Zinc finger, NF-X1-type
CDDcd060089.43E-11402450No hitNo description
SMARTSM004385.8E-4412431IPR000967Zinc finger, NF-X1-type
PfamPF014222.5E-4414429IPR000967Zinc finger, NF-X1-type
CDDcd060082.69E-10466509No hitNo description
PfamPF014220.012470493IPR000967Zinc finger, NF-X1-type
SMARTSM004385.6E-4476495IPR000967Zinc finger, NF-X1-type
CDDcd060083.30E-13524570No hitNo description
PfamPF014227.6E-7534551IPR000967Zinc finger, NF-X1-type
SMARTSM004389.6E-6534553IPR000967Zinc finger, NF-X1-type
CDDcd060082.58E-4582641No hitNo description
PfamPF0142220592603IPR000967Zinc finger, NF-X1-type
SMARTSM00438270592626IPR000967Zinc finger, NF-X1-type
CDDcd060081.49E-8620663No hitNo description
PfamPF014221.1E-4630647IPR000967Zinc finger, NF-X1-type
SMARTSM004380.002630649IPR000967Zinc finger, NF-X1-type
CDDcd060081.51E-6677725No hitNo description
PfamPF014224.3687704IPR000967Zinc finger, NF-X1-type
SMARTSM004380.023687705IPR000967Zinc finger, NF-X1-type
PfamPF014220.72740758IPR000967Zinc finger, NF-X1-type
SMARTSM004380.15740760IPR000967Zinc finger, NF-X1-type
CDDcd060082.90E-5768817No hitNo description
PfamPF0142290772794IPR000967Zinc finger, NF-X1-type
SMARTSM004380.15779800IPR000967Zinc finger, NF-X1-type
PfamPF014248.8E-5912975IPR001374R3H domain
Gene3DG3DSA:3.30.70.3301.8E-510141065IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1227 aa     Download sequence    Send to blast
MGGGRGVACT QRGRWWAWRP EWFVVSTQIL GEDSKQVAVN EGSGQIFQCV NSFGEFFLSD  60
SIAYFGTLSE NRRFESLVVS QNMSSHVRND RRDRSRFPAQ PTQPXRREWV PRGSNPAIAT  120
AAVNPPPQDQ PNPRFNPNNQ NGNVTQPNLR FNPNNLNGNV SQPTPRFNLD NPNSNVSQPN  180
HSSVPSEIRP HRGGNNGVRG QGRPVNHRRE RGRNDNQEEK GLKDSNLPQL VQEIQDKLTK  240
GTVECMICYD MVRRSAPVWS CSSCYSIFHL XCIKKWARAP TSIDMSAGKN QGFNWRCPGC  300
QSVQLTSSKE IRYDCFCGKR TDPPSDLYLT PHSCGEPCGK QLEREVPGKG VSKDDLCPHV  360
CVLQCHPGPC PPCKAFAPPR LCPCGKKIIT TRCSDRTSVL TCGQHCNKLL DCWRHRCERT  420
CHVGPCDPCQ VLVDASCFCX KKVEVVLCGD MTVKGEVKAE DGVFSCSSTC GKMLSCXNHS  480
CSEVCHPGPC GDCNLMPSKX KTCHCGKTSL QEERQSCLDP IPTCSQLCGK SLPCGMHQCQ  540
EVCHTGDCPP CLVEVTQKCR CGSTSRAVEC FKTTMENEKF TCDKPCGQKK NCGRHRCSER  600
CCPLSNSNNA LSGDWDPHFC SMPCGKKLRC GQHSCESLCH SGHCPPCLDT IFTDLTCACG  660
RTSIPPPLPC GTPPPSCQLP CSLPQPCGHT SSHSCHFGDC PPCSVPVAKE CIGGHVVLRN  720
IPCGSRDIKC NKLCGKTRQC GMHACGRTCH PPPCDTSCXA EQGSKTSCGQ ICGAPRRDCR  780
HTCTSLCHPY ASCPDSRCDY XVTITCSCGR MTATVPCDSG GNNASFKADT VYEASVIQRL  840
PAPLQPIEST GKKIPLGQRK LMCDDECAKM ERKRVLADAF DIXPPNLDAL HFGESSAVSE  900
LLSDLLRRDP KWVLSVEERC KYLVLGKXRG ATSGLKVHVF CPMLKEKRDV VRMIAERWKL  960
XVQAAGWEPK RFIVVHVTPK SKAPARILGV KGTTTVGAPQ PPAYDYLVDM DPRLVVSFPD  1020
LPRDADISAL VLRFGGECEL VWLNDKNALA VFNDPARAAT AMRRLDNGXL YHGAVVVHSN  1080
GSASMAASGS NAWGGLGTAK EGGASAVLRG NPWKKAVTRE SGWREDSWGE EEWSGSSTDA  1140
QANVWNKEVP IAASVNRWSV LDXDTALGSS ASSPRVEDSR KQPLGPSNSG LESKASGSSS  1200
SSTLAGQPVG VIADTPEVDD WEKAYE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.83921e-145fruit| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaves, buds, flowers and siliques. {ECO:0000269|PubMed:16905136}.
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028947910.10.0NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A498I5I70.0A0A498I5I7_MALDO; Uncharacterized protein
STRINGXP_009360168.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69723145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1