PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000602139 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | WRKY | ||||||||
Protein Properties | Length: 340aa MW: 36476.1 Da PI: 7.0021 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 100.8 | 8e-32 | 161 | 219 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+ver+++dp+++++tY+geHnh+ MDP0000602139 161 SDIWAWRKYGQKPIKGSPYPRGYYRCSSSkGCMARKQVERNRSDPNMFIVTYTGEHNHP 219 79*************************998****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 34.968 | 155 | 221 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.1E-31 | 155 | 221 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.92E-27 | 159 | 221 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.0E-39 | 160 | 220 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.3E-27 | 162 | 219 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MEDDWDLQAV VRGCSTATAT TTTSSTRTPS TAATASFNIS GFHSNPAAAS FSSFGPTSPQ 60 QQLLFSLPLP DPIIKPRNAI EELHELYKPF FPKSQPSLSS PQITPPTLSP LTSLSPLTTP 120 KDPRHPIHQQ QQTQHSKPSS STTTTTTTXR SKKVPVEALS SDIWAWRKYG QKPIKGSPYP 180 RGYYRCSSSK GCMARKQVER NRSDPNMFIV TYTGEHNHPA PTHRNSLAGS TRQKPFSPQT 240 ATRGDSAKPA SPTTSASADE EPVVAPQSTT VESSCKEEKG SPLITDEEDE LLGMCDSVVS 300 DDFFVGLDGL AGDYFSDHST GSFGMPWISS SAATAAGSI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 9e-22 | 152 | 222 | 7 | 80 | Disease resistance protein RRS1 |
5w3x_D | 9e-22 | 152 | 222 | 7 | 80 | Disease resistance protein RRS1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.29397 | 1e-137 | fruit |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028954969.1 | 0.0 | WRKY transcription factor 22 | ||||
TrEMBL | A0A498KK13 | 0.0 | A0A498KK13_MALDO; Uncharacterized protein | ||||
STRING | XP_008345081.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4205 | 32 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01250.1 | 2e-61 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000602139 |