PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000598064
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family HD-ZIP
Protein Properties Length: 525aa    MW: 59263.9 Da    PI: 9.6677
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000598064genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.81.6e-17133186356
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                    k+++++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rq+ +WFqNrRa++k
  MDP0000598064 133 KKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 186
                    456899***********************************************9 PP
2HD-ZIP_I/II130.28e-42132224193
    HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                    ekkrrl+ eqvk+LE++Fe  +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy+ Lkr++da+k++n++L++++++L++e+++
  MDP0000598064 132 EKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQFDAIKADNDALQSQNQKLQAEIMA 224
                    69**************************************************************************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.56E-19125190IPR009057Homeodomain-like
PROSITE profilePS5007117.119128188IPR001356Homeobox domain
SMARTSM003891.8E-17131192IPR001356Homeobox domain
CDDcd000862.73E-15133189No hitNo description
PfamPF000466.9E-15133186IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.0E-19135195IPR009057Homeodomain-like
PRINTSPR000313.1E-5159168IPR000047Helix-turn-helix motif
PROSITE patternPS000270163186IPR017970Homeobox, conserved site
PRINTSPR000313.1E-5168184IPR000047Helix-turn-helix motif
PfamPF021831.7E-16188228IPR003106Leucine zipper, homeobox-associated
PfamPF037032.0E-13436506IPR005182Domain of unknown function DUF304
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MTEADDDHPA YDSTMHEHLL SKGLLWLWRW NYAVRIWDCN PPRMDKESKW RHDPQLASTT  60
HEEGKGGSRA ADATGQTNCL RANAPAVAFL RLGLVRVASF LGKRSVSFSG IELGEEAHGE  120
DDLSDDGSQV GEKKRRLNME QVKTLEKNFE LGNKLEPERK MQLARALGLQ PRQIAIWFQN  180
RRARWKTKQL EKDYDLLKRQ FDAIKADNDA LQSQNQKLQA EIMALKNREP AESINLNKDT  240
EGSCSNRSEN NSDIKLDISR TPAIDSPPSS HHHHHHQNPT LFSSSIIRPA QLFQNTSRSE  300
AMQCQKIDQM VKEESLTNMF SQWPPXPILS PTTTTTTSSL VHHHHQSLHF SKLPFPNSLT  360
KPSTLNSNRP LTRLHVSTPT NKPSNTTATS TSKKPTTETI FFDGGAHYGD LLANLILGFT  420
LLWLPLTLAA VFRAFFLRYR FTNLRVTVIS GLTGQDRSDF SYKVIKDVQV VPRFIGEWGD  480
IIITLKDGTK VDLRSVPKFR EIAKYCLSLA EKPAVLKETG TKGF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1180188RRARWKTKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.158260.0bud| fruit| leaf| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.13e-87HD-ZIP family protein