PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000596661 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | TALE | ||||||||
Protein Properties | Length: 808aa MW: 88587.1 Da PI: 6.8424 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.5 | 2.6e-09 | 624 | 661 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LA+++gL+ +qV++WF N R + MDP0000596661 624 FEHflHPYPTDTDKHMLATQTGLSRNQVSNWFINARVR 661 564459******************************87 PP | |||||||
2 | BELL | 102.4 | 3.2e-33 | 473 | 541 | 4 | 72 |
BELL 4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e q+kkakLl ++eeV +rYkqy++q+q+v++sFe v gl sa+pY+ +Al+a+SrhFrcL + i++q+ MDP0000596661 473 EYQQKKAKLLYMQEEVSRRYKQYHQQMQMVVASFESVXGLSSATPYICMALNAVSRHFRCLTNSIKDQL 541 789***************************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 2.4E-37 | 372 | 539 | IPR006563 | POX domain |
Pfam | PF07526 | 5.4E-39 | 377 | 537 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 11.888 | 602 | 665 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.79E-11 | 605 | 666 | No hit | No description |
SMART | SM00389 | 1.2E-7 | 605 | 669 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.45E-16 | 607 | 672 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.2E-27 | 608 | 669 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 3.8E-18 | 622 | 661 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 808 aa Download sequence Send to blast |
MEMSGFRHES HVAQQSRRDK LRVNQTSXPP HHLDNLANNS GKLPLHPGLN PDIVQVRNVR 60 NANLLYDPTM FSSEMLDFSI NANAPLSAHR ITLACHDQDL GAAQPAGGES QNFGNWRSTL 120 NPPQSIDWVN NYTSGYQDVV QSSLANSSAD QISSHHVAQK HLGGGTMHFS SPSIKFVNTL 180 QDVVTSASQG TQQDQLEMAS IVHQRIMENE LVRVPSYGNQ SNTLRFNSAS NSWMDRQPIE 240 NRHNWSSGGG GGLEFSTANS VDEEMRTGMS SDXNQQGLSL SLSSNPPSNK LPVAQLIGSQ 300 DLHASTDDDD DDDHQALKDL QNSKMGKSSG GYLCSITKPS IISKTCGKSL KDIVGNSSTS 360 AYRSTGPLGP FTGYATILKS SKFLKPAQQX LDEFCWVSDS KILKTCEASE RMSGDVSASA 420 SVSISIEAGN ATETEVVAKR NNSGASSSTF YGSTEISSDG GAASISSESF WPEYQQKKAK 480 LLYMQEEVSR RYKQYHQQMQ MVVASFESVX GLSSATPYIC MALNAVSRHF RCLTNSIKDQ 540 LKHTRKALGE EYMSSSVTAA GTAECSSKGE KNFAKLKYMG LGFQKHNKSG GGSLVGFSEP 600 QQHVWRPQRG LPERSVAILR TWLFEHFLHP YPTDTDKHML ATQTGLSRNQ VSNWFINARV 660 RVWKPMVEEI HMLETRGGSF EAGQDPIIKD GNSANEGTSS RPNNDHQLSM NVMPNRQLEC 720 SVDAEQRNQE MKRSRLECQV PSNMDGGLMG FVQDQRGGFE AGGLGAVSLT LGLRHGVESA 780 QQQQQLQQQE DQLRXQLGGQ MIRDYAG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 5e-15 | 611 | 668 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 5e-15 | 611 | 668 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009367039.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 9 | ||||
TrEMBL | A0A498KB13 | 0.0 | A0A498KB13_MALDO; Uncharacterized protein | ||||
STRING | XP_009367039.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3481 | 32 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27990.1 | 8e-85 | BEL1-like homeodomain 8 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000596661 |