PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000595519 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | NF-YB | ||||||||
Protein Properties | Length: 195aa MW: 21545.5 Da PI: 9.816 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 37.2 | 6.9e-12 | 8 | 93 | 5 | 84 |
NF-YB 5 drflPianvsrimkkvlPanak......iskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplk 84 ++lP a v r++k l + k + k+a e fi ++++ a+d c+++kr+ti+gdd+l al ++ f ++++pl+ MDP0000595519 8 AEELPKAIVRRVVKDKLSQCHKgdgdliVHKEAILAFSESSRIFIHYLSATANDICREKKRQTISGDDVLKALEEIEFPEFIKPLE 93 5789**********9998876644445467788888899999******************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 5.5E-25 | 6 | 93 | IPR009072 | Histone-fold |
Pfam | PF00808 | 7.4E-9 | 10 | 80 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 3.81E-20 | 11 | 93 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MEKVVAEAEE LPKAIVRRVV KDKLSQCHKG DGDLIVHKEA ILAFSESSRI FIHYLSATAN 60 DICREKKRQT ISGDDVLKAL EEIEFPEFIK PLEGQSLLSL HWYMSKVAPQ IRSIWLIWMR 120 ADLRPRNPGK GAGKNEGKNA TKNAGTSGGK NAGKKAGTSK TKEVKKKRKL EESSSRKQGG 180 KDEDNQDEDG SGDE* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 164 | 169 | KKKRKL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.14586 | 1e-138 | bud| stem |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008391124.1 | 1e-102 | DNA polymerase epsilon subunit 3 | ||||
TrEMBL | A0A498IMZ8 | 1e-101 | A0A498IMZ8_MALDO; Uncharacterized protein | ||||
STRING | XP_008391124.1 | 1e-102 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11863 | 32 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27470.1 | 3e-36 | nuclear factor Y, subunit B11 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000595519 |