PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000594000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family TCP
Protein Properties Length: 171aa    MW: 19536.5 Da    PI: 8.4471
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000594000genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP82.88.4e-2660134273
            TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......ssssasec 73 
                     g+kdrhsk++T +g RdRRvRls+++a++++dLq++LG+ ++sk ++WLl +   ++  l+g        +    +ec
  MDP0000594000  60 FGGKDRHSKVCTIRGFRDRRVRLSVPTAIQLYDLQERLGLNQPSKVVDWLLDDDHNQVRLLPGKehevqryK----HEC 134
                    689*********************************************************999955433330....333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.6E-2562140IPR005333Transcription factor, TCP
PROSITE profilePS5136924.41562120IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MGVERYYQLA KXPATIGYRK LENGLPEGGE EQQKYSGGXL WSSTTSRECD PRIVRASRAF  60
GGKDRHSKVC TIRGFRDRRV RLSVPTAIQL YDLQERLGLN QPSKVVDWLL DDDHNQVRLL  120
PGKEHEVQRY KHECSYQPSS SSFWLLGFSK ATKEGSLYVS TLKMIEEEDE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-1567121155Putative transcription factor PCF6
5zkt_B1e-1567121155Putative transcription factor PCF6
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.229872e-86bud| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during ovule development (PubMed:25378179). {ECO:0000269|PubMed:25378179}.
UniprotTISSUE SPECIFICITY: Expressed in cotyledons, particularly in the vascular region, in leaves, roots, stems, buds, flowers and siliques. {ECO:0000269|PubMed:17307931}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5010671e-44KM501067.1 Malus domestica TCP domain-containing protein 13 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004499467.13e-37transcription factor TCP5-like
RefseqXP_022022566.15e-38transcription factor TCP13-like isoform X2
SwissprotQ9LEZ95e-35TCP17_ARATH; Transcription factor TCP17
TrEMBLA0A4D9BZV85e-37A0A4D9BZV8_SALSN; Uncharacterized protein
STRINGXP_008348175.17e-72(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08070.12e-37TCP domain protein 17
Publications ? help Back to Top
  1. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]