PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000594000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | TCP | ||||||||
Protein Properties | Length: 171aa MW: 19536.5 Da PI: 8.4471 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 82.8 | 8.4e-26 | 60 | 134 | 2 | 73 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......ssssasec 73 g+kdrhsk++T +g RdRRvRls+++a++++dLq++LG+ ++sk ++WLl + ++ l+g + +ec MDP0000594000 60 FGGKDRHSKVCTIRGFRDRRVRLSVPTAIQLYDLQERLGLNQPSKVVDWLLDDDHNQVRLLPGKehevqryK----HEC 134 689*********************************************************999955433330....333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.6E-25 | 62 | 140 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 24.415 | 62 | 120 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MGVERYYQLA KXPATIGYRK LENGLPEGGE EQQKYSGGXL WSSTTSRECD PRIVRASRAF 60 GGKDRHSKVC TIRGFRDRRV RLSVPTAIQL YDLQERLGLN QPSKVVDWLL DDDHNQVRLL 120 PGKEHEVQRY KHECSYQPSS SSFWLLGFSK ATKEGSLYVS TLKMIEEEDE * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-15 | 67 | 121 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 1e-15 | 67 | 121 | 1 | 55 | Putative transcription factor PCF6 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.22987 | 2e-86 | bud| leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during ovule development (PubMed:25378179). {ECO:0000269|PubMed:25378179}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in cotyledons, particularly in the vascular region, in leaves, roots, stems, buds, flowers and siliques. {ECO:0000269|PubMed:17307931}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM501067 | 1e-44 | KM501067.1 Malus domestica TCP domain-containing protein 13 mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004499467.1 | 3e-37 | transcription factor TCP5-like | ||||
Refseq | XP_022022566.1 | 5e-38 | transcription factor TCP13-like isoform X2 | ||||
Swissprot | Q9LEZ9 | 5e-35 | TCP17_ARATH; Transcription factor TCP17 | ||||
TrEMBL | A0A4D9BZV8 | 5e-37 | A0A4D9BZV8_SALSN; Uncharacterized protein | ||||
STRING | XP_008348175.1 | 7e-72 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF932 | 34 | 119 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08070.1 | 2e-37 | TCP domain protein 17 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000594000 |
Publications ? help Back to Top | |||
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