PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000591819 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | LBD | ||||||||
Protein Properties | Length: 49aa MW: 5371.35 Da PI: 8.6278 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 30.2 | 1.3e-09 | 3 | 47 | 2 | 41 |
DUF260 2 CaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasn 41 C +C+vl+++C++ C+l+ ++ p++q +++ +++k+F +s+ MDP0000591819 3 CKGCRVLQKGCSDTCILRSCLywinsPEAQGNATLFLAKFFCRSH 47 *****************************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 8.654 | 1 | 48 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.0E-6 | 3 | 47 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 49 aa Download sequence Send to blast |
MGCKGCRVLQ KGCSDTCILR SCLYWINSPE AQGNATLFLA KFFCRSHL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.23857 | 1e-50 | root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009354105.1 | 6e-23 | PREDICTED: LOB domain-containing protein 37-like | ||||
Swissprot | Q9SN23 | 7e-18 | LBD38_ARATH; LOB domain-containing protein 38 | ||||
TrEMBL | A0A2C9U0K7 | 3e-20 | A0A2C9U0K7_MANES; Uncharacterized protein | ||||
TrEMBL | A0A2C9VYR3 | 3e-20 | A0A2C9VYR3_MANES; Uncharacterized protein | ||||
STRING | XP_009354105.1 | 2e-22 | (Pyrus x bretschneideri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 3e-20 | LOB domain-containing protein 38 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000591819 |