PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000588193
Common NameC3HL10
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 651aa    MW: 71549.2 Da    PI: 7.4981
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000588193genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.21.1e-06249269526
                    --SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                    +C+ f++ G C+ Gd C +aHg
  MDP0000588193 249 PCPEFRK-GSCQKGDVCEYAHG 269
                    8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.201.6E-169157IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484036.06E-1611132IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.00854134IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00275484IPR002110Ankyrin repeat
PfamPF127964.1E-954121IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.5235478IPR002110Ankyrin repeat
CDDcd002044.80E-1456164No hitNo description
PROSITE profilePS5008810.41989124IPR002110Ankyrin repeat
SMARTSM002480.002289121IPR002110Ankyrin repeat
SMARTSM003561.8E-4244270IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.108244271IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-4249271IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.216279303IPR000571Zinc finger, CCCH-type
SMARTSM0035618279302IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
MESEFQKQKS VLVELSASDN LEAFRTEVEE KGFHIDEADF WYGRRIGSKK MGFEERTPLM  60
IAAMFGSTRV LKYIIQSGMA DVNRCCGSDR VTALHCAAAG GSTASLEVVK LLLDASADAN  120
CVNANGNKAV DLIAPALKSP CSSRRKAMEM LLRGDKSIME SDTEEGDQQK VSSPQMSKEG  180
SEKKEYPIDI SLPDINNGIY GTDEFRMFTF KVKPCSRAYS HDWTECPFVH PGENARRRDP  240
KKYPYSCVPC PEFRKGSCQK GDVCEYAHGV FESWLHPAQY RTRLCKDETG CTRKVCFFAH  300
RPEELRPVYA STGSAMPSPR SMSVSAADMA ALSPLALGSS AMSMPATSTP PMSPLXAASS  360
PKSGGLWQNK VNLTPPALQL PGSRLKSACS ARDLELEMEL LGLDSHSSQQ QQQQQQQHLW  420
DEISRLSSSP SYSRHGELKP TNLDDAFGSV DPSLLSQLQG LSLKPSTPNH RQNMNQLRSS  480
YPTNLSSSPV RKPSSFGLDS PSALAAAVMN SRSAAFAQQR SQSFIDRGAM NHLPLHNAPV  540
NSSTMRQSSD WGSPGGKLDW GMQGDELNKL KKSASFGFRS NNAGPPGFKT PAVEEPDVSW  600
VNTLVRDVSS ERSELFGADK KQRYHHLNNG GHEMLPSWAE QMYIEQEQRA *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.14450.0bud| flower| fruit| leaf| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and anthers. {ECO:0000269|PubMed:17609218}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001315748.10.0zinc finger CCCH domain-containing protein 29-like
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLA0A498KSW10.0A0A498KSW1_MALDO; Uncharacterized protein
STRINGXP_008354155.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.20.0C3H family protein