PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000584893
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family HRT-like
Protein Properties Length: 377aa    MW: 41944.5 Da    PI: 10.2139
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000584893genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like54.71.7e-17271301131
       HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                    iCGv  +d svC++ Pv+gRKRC+eHKGmRi
  MDP0000584893 271 ICGVVVGDDSVCRTAPVPGRKRCAEHKGMRI 301
                    8*****************************7 PP
2HRT-like56.16e-18343373131
       HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                    iCG+il dGs+C r+P++gRKRC eHKG+Ri
  MDP0000584893 343 ICGFILADGSPCGRHPIQGRKRCDEHKGRRI 373
                    8*****************************7 PP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000033Biological Processregulation of seed dormancy process
GO:0097100Molecular Functionsupercoiled DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MVAGNSTVAV SRLKREDCKR TKHDSHFSNW KILVGPSDWE DHSLGKEGAE RYRVHNLPKK  60
ESPGVYELGI SVSRTGLGRE IGKLNPDYIV PVYLGQADNV RTRLQQYGRS GXHLGNGSLT  120
GHPTDXVRKE KGPGLFVEIL SRGYPIVYRW APMENKSNAL KTETQXLDTF DYAWNTXING  180
ARRPXDVLRK LKKISSSTTQ FANIAQKLLP FSQKKVGIRI ESSKPISTGD KFSAYDDREI  240
HNSPFRVFKL GRSQPRLVSY RSITEENTSI ICGVVVGDDS VCRTAPVPGR KRCAEHKGMR  300
INGSTRVGIS ISNVDSQCRV ISNHDPVELP PVEVPASEIF VPICGFILAD GSPCGRHPIQ  360
GRKRCDEHKG RRIQKP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.128390.0bud
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1952120.0AF195212.1 Pyrus pyrifolia strain Whangkeumbae putative transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008344016.20.0protein EFFECTOR OF TRANSCRIPTION 2-like
TrEMBLA0A498KF960.0A0A498KF96_MALDO; Uncharacterized protein
STRINGXP_008344016.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF94093139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.11e-89effector of transcription2