PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000581845 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | LBD | ||||||||
Protein Properties | Length: 51aa MW: 5679.7 Da PI: 7.7321 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 30.8 | 8.3e-10 | 5 | 48 | 2 | 40 |
DUF260 2 CaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGas 40 C++C+vlr++C++ C+l ++ p++q +++ +++k+F+++ MDP0000581845 5 CNGCRVLRKGCSDTCILKLCLywidsPEAQCNATLFLAKFFSRN 48 *****************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 9.325 | 3 | 50 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.3E-6 | 5 | 48 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 51 aa Download sequence Send to blast |
MEMGCNGCRV LRKGCSDTCI LKLCLYWIDS PEAQCNATLF LAKFFSRNDL * |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009354105.1 | 3e-23 | PREDICTED: LOB domain-containing protein 37-like | ||||
Swissprot | Q9M886 | 1e-19 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | A0A498KND7 | 3e-23 | A0A498KND7_MALDO; Uncharacterized protein | ||||
STRING | XP_009354105.1 | 1e-22 | (Pyrus x bretschneideri) | ||||
STRING | XP_008363136.1 | 1e-23 | (Malus domestica) | ||||
STRING | XP_008373879.1 | 1e-23 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF20233 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 5e-22 | LOB domain-containing protein 41 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000581845 |