PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000580545
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 440aa    MW: 49781.1 Da    PI: 6.8311
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000580545genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.00011279298120
                    EEETTTTEEESSHHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                    ++Cp C k+F+r  n++ H+
  MDP0000580545 279 FSCPLCFKTFNRYNNMQMHM 298
                    89*****************9 PP
2zf-C2H214.10.00013363385123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    + C +Cgk F  + + ++H +++
  MDP0000580545 363 FMCRKCGKAFAVRGDWRTHEKNC 385
                    89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.61279301IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.66279306IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.9E-5279298IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280281301IPR007087Zinc finger, C2H2
SuperFamilySSF576672.28E-6345383No hitNo description
Gene3DG3DSA:3.30.160.601.3E-5359383IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035549363383IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.808363383IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MFLEVVIFCF DQVIPRVLGL SLEVGTDMEL ASDWTHRWGL FALNTHSTIS IERDFTLASD  60
IGIRPQNQSI LSKASSPQTS HHIMTDPYPN YFNNGWFSIN PHHHFSSTST PSSINPYNYH  120
PPNYGDYYNF CSSNNLINNI NNTLFTNHHH QCSSPPSPPL REALPLLSQS PSRSXHHEXM  180
QESAADDDHQ NFLISSRSDD IVDHEEEDDE NVTVALHLGL PSRALSSADL ISRLPSPEIS  240
SDKEADVTVA SAGYAPNRLN KGQYWIPTPA QILIGPTQFS CPLCFKTFNR YNNMQMHMWG  300
HGSQYRKGPE SLRGTQPTAM LRLPCYCCAP GCRNNIDHPR AKPLKDFRTL QTHYKRKHGI  360
KPFMCRKCGK AFAVRGDWRT HEKNCGKLWY CTCGSDFKHK RSLKDHIKAF GQGHAAYGID  420
CFEEEDDAAS EIEENDSFH*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in developing carpels (PubMed:17600712). Expressed in the shoot apical meristem and the replum (PubMed:25039392). {ECO:0000269|PubMed:17600712}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008384541.20.0zinc finger protein WIP2-like
SwissprotQ9SVY11e-134ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A498IPH80.0A0A498IPH8_MALDO; Uncharacterized protein
STRINGXP_008384541.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-122C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]