PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000579961
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GeBP
Protein Properties Length: 392aa    MW: 43831.4 Da    PI: 5.0949
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000579961genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57375.59.5e-24153247397
         DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                     +r+w+e De+++LqGl+d++++   s  +d+  fy  ++  +s  ++ksql+eK+rrL+kKf+  +++  +g   s  ++hd+  ++ls+k+W 
  MDP0000579961 153 YHRVWTEPDELLFLQGLLDCASHGXFSFPKDLRLFYGRFSATVSHXYTKSQLSEKLRRLRKKFRVVSSRLTRGLCESQLSPHDRALYDLSRKLWS 247
                    68******************9888889999****************************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.3801.5E-72493IPR019499Valyl-tRNA synthetase, tRNA-binding arm
SuperFamilySSF465891.05E-133195IPR010978tRNA-binding arm
PfamPF104581.1E-163195IPR019499Valyl-tRNA synthetase, tRNA-binding arm
PfamPF045041.0E-25154247IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006438Biological Processvalyl-tRNA aminoacylation
GO:0005737Cellular Componentcytoplasm
GO:0004832Molecular Functionvaline-tRNA ligase activity
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MYFTSGNADQ SVHLVAGEGL EAYLPLADMI DITAEIQRLS KRLSKMQAEY DGLKARLSSP  60
KFVEKAPEDI VRGVQEKAAE TEEKLTLTKN RLALLESSVL LPIKRKNPDS INPNPNLFSP  120
QLLSDFNDVV LVPTPPXSYA QTLSTARTPP FKYHRVWTEP DELLFLQGLL DCASHGXFSF  180
PKDLRLFYGR FSATVSHXYT KSQLSEKLRR LRKKFRVVSS RLTRGLCESQ LSPHDRALYD  240
LSRKLWSPEC WSTSPFGNRE KSDAGESDNL AAADEDLNQN KNQSVSDDLD VENDSGDEVK  300
TTSELARPXA ALAAXSVLDV FDXSLNEVRM LLVQQGVLCS DPVXLASGSG SSNEGKTAMD  360
FEXQWQLQRL AELDVLAQRL RLVLEDSNRW Q*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.257461e-100fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028964418.10.0probable transcription factor At3g04930
RefseqXP_028964419.10.0probable transcription factor At3g04930
TrEMBLA0A498JB470.0A0A498JB47_MALDO; Uncharacterized protein
STRINGXP_008381503.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1654199
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.13e-08DNA-binding storekeeper protein-related transcriptional regulator