PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000578820

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

Trihelix

Protein Properties

Length: 410aa MW: 47929.2 Da PI: 4.5162

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000578820	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	44.7	3.4e-14	120	205	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +Wt++ v L+e+ ++ +l+r++l+ +W ev+ k+ ++ ++er+ qCk+ ++ l+++ykk+ke +++ +ss+++yf+++e MDP0000578820 120 EWTEHAVFMLLEVXGDRFLQLGRKSLRSDDWHEVAYKVsEASKIERTDRQCKSMLDMLKRKYKKEKEKMEEM-GLNSSKWAYFKKME 205 5***********************************677899**********************96.89999******8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.4E-16	119	206	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence Send to blast
MDDIVDDPRY HPKSYSASHH DSSDRRKIDT RNTQYARPVP NRYAEEDDYE LDDFDEGNGP 60 EDQYNDEEDK HRHGFNRNFD AEEDFERLPK KRKAKNLESR YEFAPRVRPN WELGFRAEEE 120 WTEHAVFMLL EVXGDRFLQL GRKSLRSDDW HEVAYKVSEA SKIERTDRQC KSMLDMLKRK 180 YKKEKEKMEE MGLNSSKWAY FKKMEMLMAS SSRQEFGLAC GIDSGEYVFM NTRVYLERSN 240 GFDEMRDSPG ESETDDDDEX GNEDFDVFPP RMAGMGGGDG DEGSSYRVLT DSIHKFGEIY 300 EKIESSKRQQ MTMNDNMSYM AGMGGGDGDE GSSYRVLTDS IHKFGEIYEK IESSKRQQMR 360 ELEKMRKIFN KELELQKKQI LERAQVEIAK IQEADDDDET DVSVEDLSE*

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence Send to blast

MDDIVDDPRY HPKSYSASHH DSSDRRKIDT RNTQYARPVP NRYAEEDDYE LDDFDEGNGP  60
EDQYNDEEDK HRHGFNRNFD AEEDFERLPK KRKAKNLESR YEFAPRVRPN WELGFRAEEE  120
WTEHAVFMLL EVXGDRFLQL GRKSLRSDDW HEVAYKVSEA SKIERTDRQC KSMLDMLKRK  180
YKKEKEKMEE MGLNSSKWAY FKKMEMLMAS SSRQEFGLAC GIDSGEYVFM NTRVYLERSN  240
GFDEMRDSPG ESETDDDDEX GNEDFDVFPP RMAGMGGGDG DEGSSYRVLT DSIHKFGEIY  300
EKIESSKRQQ MTMNDNMSYM AGMGGGDGDE GSSYRVLTDS IHKFGEIYEK IESSKRQQMR  360
ELEKMRKIFN KELELQKKQI LERAQVEIAK IQEADDDDET DVSVEDLSE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	177	185	KRKYKKEKE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009347160.1	0.0	PREDICTED: trihelix transcription factor ASIL2-like
TrEMBL	A0A498HUX2	0.0	A0A498HUX2_MALDO; Uncharacterized protein
STRING	XP_008337444.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2441	34	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	2e-63	Trihelix family protein

Link Out ? help Back to Top
Phytozome	MDP0000578820