PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000578301
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family WRKY
Protein Properties Length: 1137aa    MW: 128752 Da    PI: 6.4106
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000578301genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY58.71.1e-1810701130259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY    2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59  
                     dDgy+W+  Gq e+ gs++pr YYrC ++   +C+++k+v++ ++dp + e+tY g H+++
  MDP0000578301 1070 DDGYAWKNCGQDEIPGSDHPRIYYRCIHKfnnDCQATKEVQKFRDDPPMYETTYFGIHTCR 1130
                     8***************************99999*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF525402.94E-44160411IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009311.1E-51161434IPR002182NB-ARC
Gene3DG3DSA:3.40.50.3001.3E-12161305IPR027417P-loop containing nucleoside triphosphate hydrolase
CDDcd019830.00169177209No hitNo description
PRINTSPR003646.5E-18177192No hitNo description
PRINTSPR003646.5E-18250264No hitNo description
PRINTSPR003646.5E-18345359No hitNo description
SuperFamilySSF520582.92E-30471671IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.101.7E-25499659IPR032675Leucine-rich repeat domain, L domain-like
PfamPF138552.5E-9531589IPR001611Leucine-rich repeat
PROSITE profilePS514504.724532554IPR001611Leucine-rich repeat
PRINTSPR003646.5E-18553569No hitNo description
SMARTSM0036912555578IPR003591Leucine-rich repeat, typical subtype
PROSITE profilePS514507.581557578IPR001611Leucine-rich repeat
PROSITE profilePS514506.156580602IPR001611Leucine-rich repeat
SMARTSM0036912601624IPR003591Leucine-rich repeat, typical subtype
PROSITE profilePS514504.801603624IPR001611Leucine-rich repeat
Gene3DG3DSA:3.80.10.103.6E-127801026IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520582.92E-30819884IPR032675Leucine-rich repeat domain, L domain-like
PROSITE profilePS514504.57820841IPR001611Leucine-rich repeat
SuperFamilySSF520582.92E-309191026IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:2.20.25.807.6E-2010601130IPR003657WRKY domain
PROSITE profilePS5081118.69310641132IPR003657WRKY domain
SuperFamilySSF1182905.23E-2010641130IPR003657WRKY domain
SMARTSM007743.9E-2210691131IPR003657WRKY domain
PfamPF031062.6E-1910701130IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0043531Molecular FunctionADP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1137 aa     Download sequence    Send to blast
MAEIVSGLAS PIVQLGEWLW IPVKRGLSYM IHYKKNIQSL KLQVGXLEAM KNGYQEIVRA  60
VQTNGEDVKP EIQIWLQDAN KAIADATQLN NEAEEAAKNC ITGNLRWRYS LGKKVMKKKV  120
ALNKLQEEGK FESISVPVMR PIEIESTMST NGFQAFAATR QAMDQVMKAL KDDKVTVIGV  180
YGMGGVGKTT MVKNVGVQAC KDGLFDHVIM AVFTQNPNLM KIQGQLSDML GLKLQEETEL  240
GRACRLRNRI QRAKRTLIIL DDIWNTLLDL ISIGIPNHTE LQGCNSKVLL TTRRLNVCHA  300
MESHVKIPLN VLSEGDSWNL FVKKAGRSFE SXXFNNIARK VARECAGLPI ALIAVARALG  360
DKDIDEWKEA ARQLEMSRPA NLEDEGDVLR CIKLSYDYLK GEDAKSCFLL CSLFPEDGKI  420
PIQDLFNYWF GNGLFREGKT LEEARARAHS VIKYLKASSL LLDGERKEYV RMHDVIRDMA  480
ISIAYSEQGH EFLVKAGWEL EDWPNDVDEG CSAISLKSNC ICKLPEELVC PRLRILXIDD  540
NLKLKKISEA FFRSLNALRV LDLSSTCISS LPSSLNLLTN LQTLHLDSCW SLKDISVLRE  600
LTKLEILSLK DSRFEELPKE IGNLASLRLL DFAGNTMIQR VPSNVISRLS RLEELYMQGS  660
FGNFGSRIEG AGEETNVGFD ELTCLSYLSN LTVQIHSAEC IPENVGFHPN WEKFYILIKS  720
QTIPLHKVEY YDFSTSYGSR ILALDTTINN LPSWFNSAVT ERAKKIVYKE CRGLINIIEE  780
YAIERLHELM SLHVESCHQM RSLMNYTATN LVPNKLVFKN LEELCVSNMN ELKELCVGDL  840
PDGSLGNLTL LEVKKCHAFA NALLQSNLLE KLEXLEVLIV DGMKSLEYVF QSDGLKPEQX  900
VMGKCREMKL EDLPALRNIW NGPAQHATFH NLKILTVAWC MKLKNIFTAD MSRCLSQLEE  960
LWLSECDCLE TIIGPSEGTL NSKIILPQLN YLSLQXLPRF KSFYSGASTD VECPSMEHLY  1020
VHYCPEYLIS TSDFNSRKEV QVNADQQVLF GPRKIKASYS MTRETPTLID DGYAWKNCGQ  1080
DEIPGSDHPR IYYRCIHKFN NDCQATKEVQ KFRDDPPMYE TTYFGIHTCR AXPNYI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j5t_C6e-28172630179663Disease resistance RPP13-like protein 4
6j5t_F6e-28172630179663Disease resistance RPP13-like protein 4
6j5t_G6e-28172630179663Disease resistance RPP13-like protein 4
6j5t_L6e-28172630179663Disease resistance RPP13-like protein 4
6j5t_O6e-28172630179663Disease resistance RPP13-like protein 4
6j5u_A6e-28172630179663Disease resistance RPP13-like protein 4
6j5v_A6e-28172630179663Disease resistance RPP13-like protein 4
6j5w_A6e-28172630179663Disease resistance RPP13-like protein 4
6j6i_C6e-28172630179663Disease resistance RPP13-like protein 4
6j6i_F6e-28172630179663Disease resistance RPP13-like protein 4
6j6i_G6e-28172630179663Disease resistance RPP13-like protein 4
6j6i_L6e-28172630179663Disease resistance RPP13-like protein 4
6j6i_O6e-28172630179663Disease resistance RPP13-like protein 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008339065.20.0probable disease resistance protein At4g27220
TrEMBLA0A498HSN80.0A0A498HSN8_MALDO; Uncharacterized protein
STRINGXP_008339065.10.0(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.17e-20WRKY DNA-binding protein 46