PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000574105
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family LBD
Protein Properties Length: 367aa    MW: 41099 Da    PI: 5.6063
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000574105genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26026.41.9e-08453148
         DUF260  1 aCaaCkvlrrkCakdCvlapyf..paeqpkkfanvhklFGasnvlkllka 48
                   +C++C++lr++C+++C ++p++   ++qp++   +  lF   nv kll+a
  MDP0000574105  4 SCNGCRILRKGCSENCSIRPCLqwIKTQPSDPPEMDALFDSINVRKLLSA 53
                   6*********************6656788999999999999999999877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031951.9E-6453IPR004883Lateral organ boundaries, LOB
PfamPF062483.7E-958118IPR009361RZZ complex, subunit Zw10
PfamPF105334.5E-7236275IPR018872Zn-cluster domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007067Biological Processmitotic nuclear division
GO:0000775Cellular Componentchromosome, centromeric region
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MRISCNGCRI LRKGCSENCS IRPCLQWIKT QPSDPPEMDA LFDSINVRKL LSAQDLGDPT  60
TPLSAPDLRL LIQRLDSHSL QIKSKIQSYL LPHHQDFANL FSVCNDAVSR SNQISDDVFN  120
FQPPHRGGDW VDYEADERHK QEEEDKEQCS PVSVLDPPFQ DDDEGRDGDG EDDDDEDGCD  180
LECSYANVQR TKHHLLQKLR RFEQLAGLDP IELEKRMLED DDDDECKEDE SETSDSSSEE  240
TSNTGSASGP GKRHCSKRRN NQVKKTICMP AIQFKIRSSV LRRHRRPSLH LRSSISXVPC  300
YNLASSSSVS GSXQHHGPXS VVFLRRSTAK XKRAFPPXTL TMCPXCERVX VPPNSSSSAT  360
FLPAAG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67100.15e-14LOB domain-containing protein 40