PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000570413
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 440aa    MW: 48205.1 Da    PI: 7.9041
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000570413genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.89.3e-09140160526
                    --SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     C +++r G C++Gd+C FaHg
  MDP0000570413 140 VCADYRR-GSCSRGDSCEFAHG 160
                    799****.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902294.55E-5134164IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-5135161IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.375136162IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-6136162IPR000571Zinc finger, CCCH-type
PfamPF006427.7E-7140160IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.287170194IPR000571Zinc finger, CCCH-type
SMARTSM003562.4170193IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010187Biological Processnegative regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MSSVCAEQHK FHPSHQLLSS KKTLLRDTNI DIPPRKLLTR RSPQEFPSSD VYAAADYRSP  60
SFSSADEALL RKFLPYNTGS DDSDDDEVDP YSSDHFRMFE FKVRRCTRSR SHDWTDCPFA  120
HPGEKARRRD PRRHHYSGTV CADYRRGSCS RGDSCEFAHG VFECWLHPAR YRTEACKDGK  180
NCKRKVCFFA HTPRQLRILP ADQVLSPTAS SKKLFHLNNH LSVGSPRSCS NNKQYCCLFC  240
HPAAATSSPT STLLAGMSHH LSPPVSPAGN CSSVSXFXSS PVMSRCGGLG LGGLDQVHAS  300
TGGLMTSKEV VAELMSSMEA MKFNEAAAAX AAASPKRWVD VSFDMNMNYA SADDDLQPQQ  360
QFILSPSTPS PTRRPFGGGG RGINFFGGDE NCSPTNGSLL GFDRDTNTHI NKKEIVNGGG  420
FASAGDSDPD LGWVNDLLM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008342887.20.0zinc finger CCCH domain-containing protein 2-like
TrEMBLA0A498HD770.0A0A498HD77_MALDO; Uncharacterized protein
STRINGXP_008342887.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62612644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.14e-73C3H family protein