PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000570413 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | C3H | ||||||||
Protein Properties | Length: 440aa MW: 48205.1 Da PI: 7.9041 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26.8 | 9.3e-09 | 140 | 160 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C +++r G C++Gd+C FaHg MDP0000570413 140 VCADYRR-GSCSRGDSCEFAHG 160 799****.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 4.55E-5 | 134 | 164 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-5 | 135 | 161 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.375 | 136 | 162 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-6 | 136 | 162 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.7E-7 | 140 | 160 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.287 | 170 | 194 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.4 | 170 | 193 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 440 aa Download sequence Send to blast |
MSSVCAEQHK FHPSHQLLSS KKTLLRDTNI DIPPRKLLTR RSPQEFPSSD VYAAADYRSP 60 SFSSADEALL RKFLPYNTGS DDSDDDEVDP YSSDHFRMFE FKVRRCTRSR SHDWTDCPFA 120 HPGEKARRRD PRRHHYSGTV CADYRRGSCS RGDSCEFAHG VFECWLHPAR YRTEACKDGK 180 NCKRKVCFFA HTPRQLRILP ADQVLSPTAS SKKLFHLNNH LSVGSPRSCS NNKQYCCLFC 240 HPAAATSSPT STLLAGMSHH LSPPVSPAGN CSSVSXFXSS PVMSRCGGLG LGGLDQVHAS 300 TGGLMTSKEV VAELMSSMEA MKFNEAAAAX AAASPKRWVD VSFDMNMNYA SADDDLQPQQ 360 QFILSPSTPS PTRRPFGGGG RGINFFGGDE NCSPTNGSLL GFDRDTNTHI NKKEIVNGGG 420 FASAGDSDPD LGWVNDLLM* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008342887.2 | 0.0 | zinc finger CCCH domain-containing protein 2-like | ||||
TrEMBL | A0A498HD77 | 0.0 | A0A498HD77_MALDO; Uncharacterized protein | ||||
STRING | XP_008342887.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6261 | 26 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03790.1 | 4e-73 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000570413 |