PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000566005
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family WRKY
Protein Properties Length: 538aa    MW: 58206.8 Da    PI: 6.7933
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000566005genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY993e-31304362259
                    --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                    +D ++WrKYGqK++kgs+fpr+YYrC+s+ gCp++k+vers++dp++++itY++eHnh+
  MDP0000566005 304 SDLWAWRKYGQKPIKGSPFPRGYYRCSSSkGCPARKQVERSRTDPNMLVITYTSEHNHP 362
                    699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081132.948298364IPR003657WRKY domain
SuperFamilySSF1182901.7E-26301364IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.6E-31301364IPR003657WRKY domain
SMARTSM007746.8E-39303363IPR003657WRKY domain
PfamPF031064.7E-26305362IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MVSSRNRSFA LPRGEEAPLF HTLSTTRFLR ASSGQPSFNQ DRSAQNSLFV PITRMENYQG  60
DLTDILRAGT TTANVGAYPS DHQEPHADTW HFPSDHPMIF PSSSSAMEEE EAKDNFGDPF  120
SSYMRDPLLN ELDISSSSLF SSPSCTARVE EGVTTTTFGG GGGGGGGHHV LSLGHHNHQS  180
GVVVVDGDPI KRPCNIFSQM LQISPSAKVP MSPCDSPVIG GAVSSSPRGI KTSPDSAAMX  240
ASDMIINANS SSAAKGCLLA NTGMQISSPR NPGIKRRKSQ AKKVVCIPAP AAANSRPTGE  300
VVPSDLWAWR KYGQKPIKGS PFPRGYYRCS SSKGCPARKQ VERSRTDPNM LVITYTSEHN  360
HPWPTQRNAL AGSTRSQPSK NXAAAALKVS PSSSHQAHQK PTSPTKEEQN ENMNDDNHVS  420
PTVITAGSNS TVKEEFEGIE KQLEIDHHQQ HLGFAYRPSM PNEQSNQSHH PEDFFADLGE  480
IEADPLNLLF SQCFSADEQQ QKGGKDAAPS DPFNLFDNWS GDHNTNNTSF GEAKRQL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B7e-26278365280Disease resistance protein RRS1
5w3x_D7e-26278365280Disease resistance protein RRS1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.263330.0fruit
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00171DAPTransfer from AT1G30650Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008383367.20.0probable WRKY transcription factor 14
RefseqXP_028966022.10.0probable WRKY transcription factor 14
TrEMBLA0A498IX330.0A0A498IX33_MALDO; Uncharacterized protein
STRINGXP_008383367.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54303454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30650.15e-92WRKY DNA-binding protein 14