PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000565292
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family CO-like
Protein Properties Length: 660aa    MW: 71937.9 Da    PI: 5.736
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000565292genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.72e-071253439
       zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                     C+ ++++++ l+C+ ++  lC  C +  H+       H++
  MDP0000565292 12 VSCDFCSDQPAVLYCRADSAKLCLFCDQLVHSAnllsrkHER 53
                   67*****************************65777777876 PP
2zf-B_box21.35.7e-075599442
       zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                    +C+++ ++ ++  C +++  lC++C    H +      H+++pl
  MDP0000565292 55 LICDNCASEAVSVRCSTDNLVLCQECDWDAHGScsvsaaHDRTPL 99
                   69*************************999954888888888775 PP
3CCT41.26.1e-154785061644
            CCT  16 kFeKkirYesRKavAesRpRvKGrFvkqa 44 
                    ++eK+irYesRKa+A++R RvKGrFvk++
  MDP0000565292 478 RYEKHIRYESRKARADTRMRVKGRFVKAT 506
                    69************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.3E-14956IPR000315B-box-type zinc finger
PROSITE profilePS501199.812956IPR000315B-box-type zinc finger
CDDcd000213.80E-81256No hitNo description
PfamPF006431.7E-61254IPR000315B-box-type zinc finger
PROSITE profilePS5011910.3815299IPR000315B-box-type zinc finger
CDDcd000211.16E-65699No hitNo description
SMARTSM003362.75799IPR000315B-box-type zinc finger
PfamPF062034.2E-11436505IPR010402CCT domain
PROSITE profilePS510179.088463505IPR010402CCT domain
PfamPF082631.4E-10540579IPR013210Leucine-rich repeat-containing N-terminal, plant-type
Gene3DG3DSA:3.80.10.102.8E-31542659IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520581.46E-25542659IPR032675Leucine-rich repeat domain, L domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 660 aa     Download sequence    Send to blast
MVSPKSGGVE GVSCDFCSDQ PAVLYCRADS AKLCLFCDQL VHSANLLSRK HERSLICDNC  60
ASEAVSVRCS TDNLVLCQEC DWDAHGSCSV SAAHDRTPLE GFSGCPSALE LASLLGLDLQ  120
DKTLPARPDL QSQNWDMGLP SMDSSWNGFG LQDLMVPNRN QNCVVYRTGE MKRQNSGGIG  180
GKQKHGIQKQ LLELFKRDLD GGGGGGGGGG GGGGENLVPG TPARNGWQEE NGSENMEGHA  240
SIDVRNENGG VDGVVAPAAA SQPVLQQQTP FTTLLMMPEE NRDGDMLWDS NPHGHNTQIW  300
DFNLGRLRDH EESGPLEVTY GSNDSGFMIK NFSELVKETS LTDTKMFRDM YQVNCPIGHE  360
DIKFNLNFDG HHQGPATSAS SNVPIGRPSS GSVFGEDKCC GSSTDINFME QSFVMKGDSL  420
RTVGTKADME LLAQNRGNAM LRYKEKKKTR RYVSFLSSST LPVPPSPYNR TCAIFVNRYE  480
KHIRYESRKA RADTRMRVKG RFVKATTDAP DASLSQMAIW VLLLHLVAAA LVLLSPATAN  540
LEGDALYALR QAVKDPNSVL QSWDPTLVDP CTWFHVTCDG DNRVTRLDLG NANLSGNLVP  600
ELGRLERLQY LELYMNNLMG SIPEQLGGLK SLVSLDLYHN NFSGSIPPSL SNLSNLKFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4lsx_C1e-505356593127Somatic embryogenesis receptor kinase 1
4lsx_D1e-505356593127Somatic embryogenesis receptor kinase 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.268030.0bud| fruit| root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6272420.0AB627242.1 Malus x domestica mRNA, microsatellite: MEST088, clone: FRT01_08_B03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028951844.10.0zinc finger protein CONSTANS-LIKE 14-like
TrEMBLA0A498HL600.0A0A498HL60_MALDO; Uncharacterized protein
STRINGXP_009349014.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47372843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33500.11e-86B-box type zinc finger protein with CCT domain