PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000562627
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 282aa    MW: 30580.8 Da    PI: 10.7402
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000562627genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.11.5e-1397143354
                    HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    ++h+e+ErrRR+riN  +++Lr+llP+      ++ +Ka+ L ++v+++++L
  MDP0000562627  97 TSHKEAERRRRQRINAHLSTLRTLLPNT-----TRTDKASLLAEVVQHVREL 143
                    79*************************9.....8***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.14594143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.67E-1197146No hitNo description
SuperFamilySSF474599.95E-1597155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-1497147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-1197143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-12100149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2606.9E-4183247No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MGNWVKLREE GKGKRGCRLM IAAVTTFDSP LSSSSSSKAV AVAAAFAVAA AVNYSESERQ  60
SWSSQNRNNN NLRDGADSIL SSAASATETA KSAEASTSHK EAERRRRQRI NAHLSTLRTL  120
LPNTTRTDKA SLLAEVVQHV RELRRQADDL ARQGRAGSEA WPFPAESDEV TLNYCNGGTK  180
LLKATLSCED RPGLNRDLVQ AIRSVRARAV RAEMMTVGSR TKNVVVMQWA GGGGEEGFRA  240
LKRALKAVVE NRTSGSRLGK LVSSNNRGRV XXDADEDMSF Y*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008362031.21e-164transcription factor bHLH30-like
TrEMBLA0A498HWF41e-162A0A498HWF4_MALDO; Uncharacterized protein
STRINGXP_008362031.11e-163(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114412834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.15e-18bHLH family protein