PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000557282

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

Trihelix

Protein Properties

Length: 362aa MW: 40056.4 Da PI: 9.5922

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000557282	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	66.3	6.4e-21	55	146	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqlea 87 +W+++e+ aLi+ +re++ +lrrg+lk+++W++v++++ + ++++qC++k+e+l+kry+ + +++++ s+ +s++++f++++a MDP0000557282 55 CWSHDETVALIDSYREKWYSLRRGNLKATHWQDVADAVarrcPAASPAKTAVQCRHKMEKLRKRYRTEIQRARSMpLSRFTSSWVHFKRMDA 146 8******************************9999965556667789*********************977999********85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	8.4E-22	54	147	No hit	No description
SMART	SM00595	7.9E-12	63	152	IPR006578	MADF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MASPPSSPQD DSILPLQSDP PQAVPLALPA PPLTQSQQTQ PNPTPPSSRR LPPPCWSHDE 60 TVALIDSYRE KWYSLRRGNL KATHWQDVAD AVARRCPAAS PAKTAVQCRH KMEKLRKRYR 120 TEIQRARSMP LSRFTSSWVH FKRMDAMEKG PAAGKRENSE SPGEEEENEE NEEEEDPDQE 180 LYEELRYGSN MKSMSKLYRN GVGVGGGSGG SGGGAGAGSG FRIRIPTGVS IAQPGTKVYP 240 KMDQKFGMNS NPASVYGSAK VMRECGNSGR PGLGKREGNG RERERDPVAE MVSAIKLLGD 300 GFVRMEQMKM EMAREVEAMR MEMEMKRTEM ILDSQQRIVE AFAKAVSEKK KKAKRMPSPE 360 A*

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MASPPSSPQD DSILPLQSDP PQAVPLALPA PPLTQSQQTQ PNPTPPSSRR LPPPCWSHDE  60
TVALIDSYRE KWYSLRRGNL KATHWQDVAD AVARRCPAAS PAKTAVQCRH KMEKLRKRYR  120
TEIQRARSMP LSRFTSSWVH FKRMDAMEKG PAAGKRENSE SPGEEEENEE NEEEEDPDQE  180
LYEELRYGSN MKSMSKLYRN GVGVGGGSGG SGGGAGAGSG FRIRIPTGVS IAQPGTKVYP  240
KMDQKFGMNS NPASVYGSAK VMRECGNSGR PGLGKREGNG RERERDPVAE MVSAIKLLGD  300
GFVRMEQMKM EMAREVEAMR MEMEMKRTEM ILDSQQRIVE AFAKAVSEKK KKAKRMPSPE  360
A*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.6177	0.0	bud\| leaf\| stem

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009375369.1	0.0	PREDICTED: trihelix transcription factor ASIL2-like
TrEMBL	A0A498JES2	0.0	A0A498JES2_MALDO; Uncharacterized protein
STRING	XP_008343662.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4638	28	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	4e-60	Trihelix family protein

Link Out ? help Back to Top
Phytozome	MDP0000557282