PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000542351
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GATA
Protein Properties Length: 91aa    MW: 9980.79 Da    PI: 10.9283
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000542351genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA41.22.3e-13640135
           GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                   C++Cgt kT++WR gp gnktL  aC  +yrk g+
  MDP0000542351  6 CQHCGTEKTSQWRPGPHGNKTLXXACXXRYRKSGK 40
                   ********************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501149.723155IPR000679Zinc finger, GATA-type
SMARTSM004011.0E-7251IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.109.9E-10344IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.52E-10360No hitNo description
CDDcd002021.13E-8555No hitNo description
PfamPF003204.0E-11640IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
MIGRKCQHCG TEKTSQWRPG PHGNKTLXXA CXXRYRKSGK LVPEYXPASS PTFSRELHLN  60
RLSKTLRGGE VVAQRDXTTG GGDEGRSGRK *
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in roots. Also expressed in stems, flowers and leaves. {ECO:0000269|PubMed:12139008}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024009589.11e-22GATA transcription factor 1
SwissprotQ8LAU93e-22GATA1_ARATH; GATA transcription factor 1
TrEMBLA0A1R3KQ022e-21A0A1R3KQ02_9ROSI; Zinc finger, GATA-type
TrEMBLW9R3B33e-21W9R3B3_9ROSA; GATA transcription factor 1
STRINGXP_010097024.14e-22(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85372941
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.14e-24GATA transcription factor 1