PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000537549
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB_related
Protein Properties Length: 584aa    MW: 63572 Da    PI: 9.4416
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000537549genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.81.1e-12352396347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+  ++ + ++lG+g+W+ I+r   ++Rt+ q+ s+ qky
    MDP0000537549 352 PWTEEEHRTFLIGLEKLGKGDWRGISRNYVTTRTPTQVASHAQKY 396
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.160.10.101.5E-1235209No hitNo description
SuperFamilySSF511611.66E-2336187IPR011004Trimeric LpxA-like
PfamPF001323.2E-6109140IPR001451Hexapeptide repeat
PfamPF137201.2E-10150182IPR029098Udp N-acetylglucosamine O-acyltransferase, C-terminal
PROSITE profilePS501588.598225242IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129419.284345401IPR017930Myb domain
SuperFamilySSF466893.04E-17346402IPR009057Homeodomain-like
TIGRFAMsTIGR015578.9E-18348400IPR006447Myb domain, plants
SMARTSM007172.8E-9349399IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-10349395IPR009057Homeodomain-like
CDDcd001674.48E-8352397No hitNo description
PfamPF002492.5E-10352396IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MRALVKVGGK RLSSALSSLS SPYIRRFCSS LNSGSVHPSA NVHPNAVLGQ VSNLISSFEL  60
FIGVVQNLSG SGAIVGDDLP GRTVLGCDNV IGHHAVVGVK CQDLKYKAIG NNNLIMGSCH  120
IAHDCKIGNN IIFANNTLLA GHVVVEITQD VPKYMMVAGE RAVLRGLNLE GLRRNGFTAA  180
EAARGCAEET MEYNKKSQMH SRIIKLQEAL NTEALNIIAW LKMGRKCSHC GNIGHNSRTC  240
TNFRGTPSST SFVGFRLFGV QLHHDHHHIV MSSSNMNSNS ANHHVAMSMK KSYSTDCLPT  300
TSSASSSSPS NSSLSPSRLS MEENICAADK ASIGYLSDGL ICRAQERKKG VPWTEEEHRT  360
FLIGLEKLGK GDWRGISRNY VTTRTPTQVA SHAQKYFLRQ ASLTKKKRRS SLFDMFGSSN  420
NINMATYDPI PTQRDNIIHG DMAIDTSTLP PLQRSTAAKN LKSDHNQKPP VSRTTTQQLP  480
AWIYGLIDSQ MKSSSSSSEA SVVPDLELTL AAPTSPNLEQ QNNSSPTPAG ADDYLTQAIG  540
GEPPQQHPKM DNSRNYLEKQ WRGDLHHKIT KINIPLNMPC TSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3t57_A3e-523618110235UDP-N-acetylglucosamine O-acyltransferase domain-containing protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1404408KKKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.267371e-172leaf
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00565DAPTransfer from AT5G56840Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008337686.10.0transcription factor MYBS3-like
TrEMBLA0A498HTD90.0A0A498HTD9_MALDO; Uncharacterized protein
STRINGXP_008337686.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32133271
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.17e-53MYB_related family protein