PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000535412
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 473aa    MW: 50211.9 Da    PI: 8.3525
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000535412genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.96e-124873227
                   -S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                   +++ C++++rtG+C yG+rC+++H++
  MDP0000535412 48 DEADCSYYLRTGICGYGSRCRYNHPR 73
                   6799********************96 PP
2zf-CCCH421.6e-1396119427
                    ---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                    + C++++rtGtCk+G++CkF+H++
  MDP0000535412  96 PVCQYYMRTGTCKFGASCKFHHPK 119
                    79********************96 PP
3zf-CCCH331e-10139165127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                    +++++C+++ +tG+Ck+ ++CkF+H++
  MDP0000535412 139 PGERECSYYVKTGQCKFSATCKFHHPQ 165
                    5789*********************97 PP
4zf-CCCH38.91.4e-12300326127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                    +++++C++++rtG Ck+G++C+++H+p
  MDP0000535412 300 PGQPECQYYMRTGDCKFGSSCRYHHPP 326
                    5789*********************97 PP
5zf-CCCH34.82.7e-11348371326
                    S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                     +lC ++++ G Ck+G+ CkF H+
  MDP0000535412 348 APLCTHYQQRGACKFGPACKFDHP 371
                    68*********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.0334674IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-54673IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-94873IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-64975IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.9E-55273IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.12692120IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-793119IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-694119IPR000571Zinc finger, CCCH-type
PfamPF006425.2E-1196119IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.7E-697118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582138166IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-4138165IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-8140165IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-5141166IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.37299327IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-6299326IPR000571Zinc finger, CCCH-type
PfamPF006427.5E-10301326IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-6303328IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-5305327IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.413345373IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-6345372IPR000571Zinc finger, CCCH-type
PfamPF006427.2E-9348371IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5349375IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-5350370IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MERYGRAAEG SQSDPPPEWN IPGPETGLEE SMWQLGLRPG ESYPERPDEA DCSYYLRTGI  60
CGYGSRCRYN HPRDRSTVTV AARPGGLEYP ERASQPVCQY YMRTGTCKFG ASCKFHHPKQ  120
GGSSGSPVSL NYYGYPLRPG ERECSYYVKT GQCKFSATCK FHHPQPAGIQ LPVPSPAPRV  180
SPVPATHTLY QTVQSPSVSS QQYEVVFARP PLLQGSYVPS PYGQVLLSPG TIPFPGWNPY  240
QAPASQLPSS TQPGVGSGTL YTQLSPSAPA YTGVYQPIPL PSSFGLPTTS QKELSFPERP  300
GQPECQYYMR TGDCKFGSSC RYHHPPEAVQ PKATVVLSSS GLPSRPGAPL CTHYQQRGAC  360
KFGPACKFDH PIGTLSYSSS TSSLADMPVA PYPVGSSIGT LAPSSSSSEL RPELSSSSGK  420
ELVSARMSSS LSTSSGSVGS TVSKGGVTPV GVQQSSQGSG PSVGSGNNTE SQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.111480.0bud| fruit| leaf| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008340827.20.0zinc finger CCCH domain-containing protein 58
SwissprotQ6NPN31e-158C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLA0A498I9Z30.0A0A498I9Z3_MALDO; Uncharacterized protein
STRINGXP_009352233.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06410.11e-141C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]