PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000534647
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family TCP
Protein Properties Length: 384aa    MW: 42824.8 Da    PI: 9.7473
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000534647genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP721.9e-2290158265
            TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLl.....qqakpaikeltgt 65 
                     g+kdrhsk++T +g+RdRRvRls+++ ++++dLq++LG+ ++ k ++WLl     q++ p+ik +  +
  MDP0000534647  90 FGGKDRHSKVCTIRGLRDRRVRLSVPTKIQLYDLQERLGLNQPIKVVDWLLdddhnQESCPSIKNILLL 158
                    689************************************************444444566777776666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.3E-2092165IPR005333Transcription factor, TCP
PROSITE profilePS5136919.79392150IPR017887Transcription factor TCP subgroup
SuperFamilySSF643568.7E-12152243IPR011012Longin-like domain
Gene3DG3DSA:3.30.450.607.2E-6201243No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006810Biological Processtransport
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MFLRTPEGKA IFERWELVST VGCRKLENGL TEGGEEQQKY SGGRLWSSTT SRECVAREPN  60
KISSNPNLSR SSTPWPRLKD PRIVRASRAF GGKDRHSKVC TIRGLRDRRV RLSVPTKIQL  120
YDLQERLGLN QPIKVVDWLL DDDHNQESCP SIKNILLLDS EGKRVAVKYY SEEDWPTXAA  180
KESFEKAVFT KTQKTNARTE GNVDKKEALE NLDLILLCLD EIVDGGIVLE TDSNVIASKV  240
ASHSIDAGAP LSEQSKQASS NGKTALFSLP VKKHTKLTSS FFANPRLFTS FTSKAVSEFD  300
GRHEPNLYPR NEAVFRPSKP FLSKSNTPRT PEIWGGSDGG GREGRRRLEI WGEDQQSGEG  360
IGKSSSNKKI FGXFFSLPFS YSV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.163241e-115fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6272903e-68AB627290.1 Malus x domestica mRNA, microsatellite: MEST153, clone: FLW01_44_G04.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.14e-35plastid transcription factor 1