PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000527802 | ||||||||
Common Name | HSF6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | HSF | ||||||||
Protein Properties | Length: 295aa MW: 32734.8 Da PI: 8.7631 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 116.5 | 1.6e-36 | 10 | 100 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 Fl+k+y +++d++l+++isw+e+g++fvv+++ +fa+++LpkyFkh+nf+SFvRQLn+YgF+k+ ++ weF++++F++g+kell++i MDP0000527802 10 FLTKTYLLVDDPSLDDVISWNESGTTFVVWKTXDFARDLLPKYFKHNNFSSFVRQLNTYGFRKTVPDK---------WEFANENFQRGQKELLSEI 96 9***************************************************************9999.........******************* PP XXXX CS HSF_DNA-bind 98 krkk 101 +r+k MDP0000527802 97 RRRK 100 **98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 4.9E-38 | 3 | 93 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 2.0E-60 | 6 | 99 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 4.72E-34 | 7 | 99 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 4.5E-32 | 10 | 99 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.0E-20 | 10 | 33 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.0E-20 | 48 | 60 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.0E-20 | 61 | 73 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MAQRSVPAPF LTKTYLLVDD PSLDDVISWN ESGTTFVVWK TXDFARDLLP KYFKHNNFSS 60 FVRQLNTYGF RKTVPDKWEF ANENFQRGQK ELLSEIRRRK PVTSTAAQAA LDEKSGGPST 120 PSNSGEELAS TSTSSPDSKN PGSVETATLS QVVNLSDENK KLKRENENLN SELAQTKKQC 180 NELVGFLVKY VKMGPEQINR IIGRGSYGPT CDDFEXNXRG LGLNMDGGDD DEEEKEGLKL 240 FGVWVKGDEK MKGKKTGRDE KLGVSGISGV PRTKRMKGGV DFHXPMMRSG KVCN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 3e-26 | 5 | 106 | 16 | 125 | Heat shock factor protein 1 |
5d5u_B | 4e-26 | 5 | 99 | 25 | 129 | Heat shock factor protein 1 |
5d5v_B | 4e-26 | 5 | 99 | 25 | 129 | Heat shock factor protein 1 |
5d5v_D | 4e-26 | 5 | 99 | 25 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.14230 | 0.0 | cell culture| fruit| leaf| root| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001315657.1 | 0.0 | heat shock factor protein HSF24 | ||||
Swissprot | P22335 | 1e-100 | HSF24_SOLPE; Heat shock factor protein HSF24 | ||||
TrEMBL | A0A498KPE6 | 0.0 | A0A498KPE6_MALDO; Uncharacterized protein | ||||
STRING | XP_008340075.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7114 | 32 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36990.1 | 2e-78 | heat shock factor 4 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000527802 |
Publications ? help Back to Top | |||
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