PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000526829
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 899aa    MW: 99790 Da    PI: 4.614
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000526829genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.81.6e-12295317426
                    ---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                    e C+++++tG Ck+G++CkF+H+
  MDP0000526829 295 EDCSYYLKTGSCKFGSNCKFNHP 317
                    89********************9 PP
2zf-CCCH33.56.9e-11347371226
                    -S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                    ++++C++++r+G Cky ++C+F+H+
  MDP0000526829 347 DERECPYYMRNGSCKYASNCRFNHP 371
                    5799********************9 PP
3zf-CCCH20.96.3e-07487508627
                    -SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                    C++f+rtG Ck+ ++Ck++H++
  MDP0000526829 487 CSYFLRTGDCKFKSNCKYHHPK 508
                    ********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.79E-6290319IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.094291319IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-6291318IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-10295317IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-5297317IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.427346373IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-5347372IPR000571Zinc finger, CCCH-type
PfamPF006428.5E-8347371IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-4351370IPR000571Zinc finger, CCCH-type
SMARTSM003566.6E-4481508IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.22481509IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-4487508IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.709812840IPR000571Zinc finger, CCCH-type
SMARTSM0035620812839IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 899 aa     Download sequence    Send to blast
MEISEAISLV PPDXETPSTN HAHSDQGFLP SSPNPALASS GLDHAVLDEL QKLDLKEEGE  60
DDGEPDEVQK LDSVEKVEED GAGELQKVDL KAEDGAGELQ KVDLKAEDGA GELQKVEFSE  120
GVEVPLNPTS VPLLXRSDLV PEILDWIRTL DPAVLNRIRN RDPAILHEIQ QFDLEIRNFD  180
PSIVDEIGNF DPAFPSDLKA EEEGAGELQK VDSKAEEGGE GVEEEEKSSG EQEIEIVNGE  240
KNERQSEQSE QSDGGEGWGG NQGWEEDGGG VEEKKAVETQ ESNRRYQYPV RPEAEDCSYY  300
LKTGSCKFGS NCKFNHPVRR KPNQVPKERV KDKDESAENP SQTECKDERE CPYYMRNGSC  360
KYASNCRFNH PDPTXTGGSD PPSGYGNGGP ASLQGASQST VAPWSAPRPL NEXPVYSTXX  420
IPPPQVVSSQ NSEWNGYQAX AYVPERIMPA RPPYMMNNSL AEINXYKQYP HQNQVEEFPE  480
RPGQPFCSYF LRTGDCKFKS NCKYHHPKTH TAVAPQIALS DKGLPLRPRV CFLHNVVASC  540
KFTAKPSNPV SATVAAASAA AISTKTMLSA ARLLLPLSLS VLVAIYNYYK SRQKSEFSEG  600
VKVPLNPTSV PSPAPSDRYQ EILHWIRTLD TLNPALLNRI RNRDPALLHE IQQFDPAVEI  660
RNFDPSIVDE IRNLDPAFPS EFSESVGVAQ NPPSVPSPSE PSVVEILDWI GTLGPAVLDE  720
IQQFDPAFLD EDRNFDPSIV DGIRKLSLKD KEEKAEEEEK ERETEKEKEN EKEREREKSE  780
RSSGGGGGNE NGGEVEEEVV GESSRRNQYP LRPEAGDCRY DLRTGNCKFG SNRKNNHPRR  840
RKNKQFPQFS PRRLGFGDVE ASSTMWMLGS RXSKAGFAKP SPVSRWSSQG REKSVGRK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1837841PRRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.232660.0bud
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028948469.10.0LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 67-like
TrEMBLA0A498I3J30.0A0A498I3J3_MALDO; Uncharacterized protein
STRINGXP_008367485.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41563361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.12e-68C3H family protein