PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000523096 | ||||||||
Common Name | TCP13 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | TCP | ||||||||
Protein Properties | Length: 322aa MW: 34315.7 Da PI: 9.1072 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 123.4 | 2.5e-38 | 69 | 153 | 2 | 86 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnss 86 a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i + tgt++++as+ a+ s+s+++ s MDP0000523096 69 APKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIVATTGTGTIPASALaAAGGSVSQQG-TS 153 789******************************************************************99854444444433.22 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.0E-30 | 74 | 251 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 26.885 | 75 | 129 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008361 | Biological Process | regulation of cell size | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000987 | Molecular Function | core promoter proximal region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MDPKGSKQTQ DIPSFLSLPP QSQPQPEQQQ QPQQQPQPNN NMSDNKPAEI KDFQIVIADK 60 DESGKKQLAP KRSSNKDRHT KVEGRGRRIR MPALCAARIF QLTRELGHKS DGETIQWLLQ 120 QAEPSIVATT GTGTIPASAL AAAGGSVSQQ GTSLSAGLHQ KIDELGGSSG GRTSWAMVGG 180 NLGRPHVAGV GGLWPPVSSF GFQSSSGPPS ATTNLGTESS NYLQKIGFPG FDLPVSNXGP 240 MSFTSILGGG NQQQQQQLPG LELGLSQDGH IGVLNSQALS QIYQQMGHAR VHQQPPQHHH 300 QQHHHQQQQP PSKDDSQGSG Q* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.11331 | 0.0 | bud| fruit| leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00636 | PBM | Transfer from Glyma.19G095300 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028963464.1 | 0.0 | transcription factor TCP20-like | ||||
Swissprot | Q9LSD5 | 1e-79 | TCP20_ARATH; Transcription factor TCP20 | ||||
TrEMBL | A0A498J158 | 0.0 | A0A498J158_MALDO; Uncharacterized protein | ||||
STRING | XP_009346779.1 | 1e-160 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3339 | 32 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27010.1 | 2e-59 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000523096 |