PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000519909 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | Trihelix | ||||||||
Protein Properties | Length: 242aa MW: 27732.4 Da PI: 8.3593 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 29.1 | 2.6e-09 | 36 | 105 | 7 | 76 |
trihelix 7 vlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsess 76 l L++ + +e + ++ + ++W+ +++++ g++r+ q + kw+ l ++yk ik++e k ++ +s MDP0000519909 36 ELILVNEVAAVEADCLKALSSFQKWKIIAQNCFTLGVSRTLDQYRRKWDALFGEYKGIKQWEAKCRASDS 105 55666666677777777778889****************************************9644433 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MKPEQTPSQL DRSHRSSGNR XSTRSQVAPD WNPTDELILV NEVAAVEADC LKALSSFQKW 60 KIIAQNCFTL GVSRTLDQYR RKWDALFGEY KGIKQWEAKC RASDSYWVLG IERRKRNGLP 120 ENFDQELFSG IDKLVRVRGN QSDTDPDSDP EDEAEAEXEE LDSEPESKRR KRRSIPQKSC 180 PKENSFRSCK REKPRETHAQ EKPQETHAEE KPVGSGLKAI PTKSLAEERP QKSCVKEKTY 240 K* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.26606 | 0.0 | leaf |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008378143.2 | 1e-172 | trihelix transcription factor ASR3-like | ||||
TrEMBL | A0A498JAN2 | 1e-166 | A0A498JAN2_MALDO; Uncharacterized protein | ||||
STRING | XP_008378143.1 | 1e-176 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6732 | 26 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31270.1 | 9e-42 | sequence-specific DNA binding transcription factors |
Link Out ? help Back to Top | |
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Phytozome | MDP0000519909 |