PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000517924 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | WRKY | ||||||||
Protein Properties | Length: 119aa MW: 13750.8 Da PI: 4.9865 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 37.6 | 4.4e-12 | 23 | 47 | 1 | 25 |
---SS-EEEEEEE--TT-SS-EEEE CS WRKY 1 ldDgynWrKYGqKevkgsefprsYY 25 ldDgy+WrKYGqK+vk+s +pr+ + MDP0000517924 23 LDDGYKWRKYGQKVVKNSLHPRAHF 47 59********************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.3E-13 | 8 | 47 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.18E-11 | 15 | 47 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 13.414 | 18 | 47 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-5 | 23 | 55 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.3E-8 | 24 | 47 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 119 aa Download sequence Send to blast |
MKVRRKLREP RFCFQTRSDV DVLDDGYKWR KYGQKVVKNS LHPRAHFGDN LVEPSDMLEL 60 NEMIVPAPIV DFEIGEPESY DFCFLQGAAG LIFEGGFEWI FKEPLGLDVK DECFFKGR* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 1 | 7 | KVRRKLR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.27696 | 2e-39 | bud| fruit| leaf| stem |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM622067 | 4e-40 | HM622067.1 Medicago truncatula STP gene, complete cds. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7294 | 32 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44745.1 | 6e-27 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000517924 |