PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000517554
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family BBR-BPC
Protein Properties Length: 513aa    MW: 57033.6 Da    PI: 10.2106
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000517554genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind358.81.1e-1092025121301
      GAGA_bind   1 mdddgsre..rnkg.yye...............pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalver 77 
                    mdd  ++e  r+k  yy+               ++ ++l   +++++ms+ia+rda+irern+al+ek++a+a+rd+a+ qrd+al++r+ al+er
  MDP0000517554 202 MDDGRQHEngRHKMdYYRggvaspwnmmaqqqaKEpNALV--MNKKIMSIIADRDAAIRERNAALAEKNEALAARDEALRQRDEALTQRDSALMER 295
                    6776665558999889999999999999987653345666..99**************************************************** PP

      GAGA_bind  78 dnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkak.kkkkkse 172
                    dn+++al  ++n+   + p g ++ +g+k ++   + +   l+d  + +++ +++ea+pi+   +ea +++++k+    k++k+++ak + kk +e
  MDP0000517554 296 DNAYAALHSRDNA--VNFPLGGGAQRGAKRVQRPSN-HSVTLADVHYSTKDVHITEAYPISVISPEAVKSRQTKRA---KENKASRAKqSRKKVGE 385
                    *********9998..5678899999*******8877.789***************************999999944...44444444413344466 PP

      GAGA_bind 173 kskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkkl 268
                    + +++ ++++   + k+e+++ dl+ln vs+Dest+PvPvCsCtG++rqCYkWGnGGWqS+CCtt +S+yPLP+++++r+aR++grKmS+++f++l
  MDP0000517554 386 DLNRQASSDG--IKYKSEWDTHDLGLNLVSFDESTMPVPVCSCTGIPRQCYKWGNGGWQSSCCTTHMSMYPLPQMPNKRHARMGGRKMSGSVFTRL 479
                    7777766666..57********************************************************************************** PP

      GAGA_bind 269 LekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                    L++Laa+G+dls p+DLk++WA+HGtn+++ti+
  MDP0000517554 480 LSRLAADGHDLSIPLDLKEYWARHGTNRYITIK 512
                    ********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012261.6E-140202512IPR010409GAGA-binding transcriptional activator
PfamPF062178.6E-100202512IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MPISFEEISK QVIGTNLEVN RLEIANLAQR PTLTPSLFSF AHKPHDSTPT WPTPSPNHQA  60
THGSPSVVTS PRFFQVISTP VEPISSPEAP KKIEKTRKII FFLPWSGVKT KQATKDDPLH  120
GQDPNRCGGI CGAKNNHTVT RGSLDENDKN TLEANRDSYT RAANNHPLTK LKMSKIDNNS  180
KPISSILIKS FLQALAANIS KMDDGRQHEN GRHKMDYYRG GVASPWNMMA QQQAKEPNAL  240
VMNKKIMSII ADRDAAIRER NAALAEKNEA LAARDEALRQ RDEALTQRDS ALMERDNAYA  300
ALHSRDNAVN FPLGGGAQRG AKRVQRPSNH SVTLADVHYS TKDVHITEAY PISVISPEAV  360
KSRQTKRAKE NKASRAKQSR KKVGEDLNRQ ASSDGIKYKS EWDTHDLGLN LVSFDESTMP  420
VPVCSCTGIP RQCYKWGNGG WQSSCCTTHM SMYPLPQMPN KRHARMGGRK MSGSVFTRLL  480
SRLAADGHDL SIPLDLKEYW ARHGTNRYIT IK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.137960.0fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal and petal vasculature, in anthers, in young rosette, in the lateral and primary roots, and in the whole ovule. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008365901.10.0protein BASIC PENTACYSTEINE4-like isoform X2
RefseqXP_028965370.10.0protein BASIC PENTACYSTEINE4-like isoform X2
SwissprotQ8S8C61e-132BPC4_ARATH; Protein BASIC PENTACYSTEINE4
TrEMBLA0A498ITJ60.0A0A498ITJ6_MALDO; Uncharacterized protein
TrEMBLA0A498JUJ20.0A0A498JUJ2_MALDO; Uncharacterized protein
STRINGXP_008365900.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69743348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21240.21e-125basic pentacysteine 4