PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000517262 | ||||||||
Common Name | AP2D47, LOC103439589 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | ERF | ||||||||
Protein Properties | Length: 234aa MW: 26253.3 Da PI: 6.6353 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.2 | 8.5e-18 | 131 | 181 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp k +r++lg+f+t +Aaka++ a+ kl+g MDP0000517262 131 HYRGVRRRP-WGKYAAEIRDP---ArKGTRVWLGTFDTDVDAAKAYDCAAFKLRG 181 7********.**********8...4445**********99*************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.4E-31 | 130 | 190 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.8E-36 | 131 | 195 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.07E-29 | 131 | 189 | No hit | No description |
Pfam | PF00847 | 1.6E-12 | 131 | 181 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.526 | 131 | 189 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-22 | 131 | 190 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.5E-13 | 132 | 143 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-13 | 171 | 191 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MAISFPFCSH FDMSAHEEQD DSTLELIRQH LLGDFTFTDS FISHLNFQFQ PVKPEYSSLS 60 ESGPSSPISN PNHHSPQFSN SETKPKIVNL PSMEVEPLNL SSPKRKNSTS QNPGPKDELQ 120 QVSGPGDALR HYRGVRRRPW GKYAAEIRDP ARKGTRVWLG TFDTDVDAAK AYDCAAFKLR 180 GRKAILNFPL EAGVSEPPVN TARKRRRSVK QEEVAETEEL ELQSWVLWEG EGT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-27 | 130 | 196 | 4 | 70 | ATERF1 |
3gcc_A | 2e-27 | 130 | 196 | 4 | 70 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 202 | 206 | RKRRR |
2 | 202 | 207 | RKRRRS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.13344 | 0.0 | bud| fruit| leaf |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU732471 | 0.0 | GU732471.1 Malus x domestica AP2 domain class transcription factor (AP2D47) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001306185.1 | 1e-174 | ethylene-responsive transcription factor ERF106-like | ||||
TrEMBL | D5L131 | 1e-173 | D5L131_MALDO; AP2 domain class transcription factor | ||||
STRING | XP_008376371.1 | 1e-174 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5257 | 30 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07580.1 | 5e-44 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000517262 |
Entrez Gene | 103439589 |
Publications ? help Back to Top | |||
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