PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000517257
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 337aa    MW: 37330.2 Da    PI: 5.1947
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000517257genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22e-18193243255
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    +++GVr+++ +g+++AeIrdp +ng  +r++lg++ t eeAa a+++a+ +++g
  MDP0000517257 193 HFRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTYETSEEAALAYDRAAFRIRG 243
                    79*******.***********9987..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.78E-32192252No hitNo description
Gene3DG3DSA:3.30.730.107.7E-31193252IPR001471AP2/ERF domain
PROSITE profilePS5103223.881193251IPR001471AP2/ERF domain
PfamPF008477.4E-14193243IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-22193253IPR016177DNA-binding domain
SMARTSM003806.0E-37193257IPR001471AP2/ERF domain
PRINTSPR003676.8E-10194205IPR001471AP2/ERF domain
PRINTSPR003676.8E-10217233IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MEEQPQHYTS CCSLTVNNIS SPCMMPCLTQ QWGDLPFQVD NSEDMIVYNS VHDALSLGWS  60
PDHTLPFQVD DWDDMIDYNS LHDALSPGWS PDHSWECVKP EQTYDLDHLF GQSHDQLPPD  120
VSTQSQPHDF NVPINGNEPS PTLVLPPDTD IPPLDHDDRD QNQVQVGDAV AEQDGVNVNI  180
PKLQKSGVAR GKHFRGVRQR PWGKFAAEIR DPAKNGARVW LGTYETSEEA ALAYDRAAFR  240
IRGSKALLNF PHRIGLNEPP PVRVTGKRKE PEQEAAASSS TSSSSSATPT AATKRTKLDK  300
SVSSSADHDH QANVRHKRQK NNTSYLLPLG EQLLVS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-38189258170ATERF1
3gcc_A7e-38189258170ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.72100.0fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2883480.0AB288348.1 Malus x domestica MdERF2 mRNA for ethylene response factor, complete cds.
GenBankKC1288570.0KC128857.1 Malus x domestica cultivar Taishanzaoxia ethylene response factor (ERF2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008376369.10.0ethylene-responsive transcription factor 2-like
TrEMBLA0A498JIF50.0A0A498JIF5_MALDO; Uncharacterized protein
STRINGXP_008376369.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1691658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.11e-40ethylene responsive element binding factor 2