PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000515080 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | TCP | ||||||||
Protein Properties | Length: 531aa MW: 55579 Da PI: 6.8748 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 132 | 5.8e-41 | 122 | 262 | 2 | 116 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg........ 88 +++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+p+i++ tgt++++a+++ + s +ss+s+ s++ MDP0000515080 122 PVAKRSTKDRHTKVEGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPSIIATTGTGTIPANFStLNISLRSSGSSLSAPpsksaphs 217 5789*****************************************************************999877777777775444466667788 PP TCP 89 .........................kaaksaakskksqksaasalnlakesra 116 + +++q++++++ + +++ ++ MDP0000515080 218 fhgalalthrphydegfahsgllgfH--------QQPQQQQQQHPQHHHQPHQ 262 89999999999999987655444432........2222222223333333332 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.6E-39 | 127 | 261 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.265 | 128 | 182 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 531 aa Download sequence Send to blast |
MASDLLQEGE EEEGHPSMGS ISIQAGLTTT SHSTPPPPTT SAPSSASFSS SSSTSSPSST 60 STSTAPPQLV DASLAIATRS DPHPPTRPGS LLDSAKNNQI QQQLTISPAT TPPPAAAATT 120 TPVAKRSTKD RHTKVEGRGR RIRMPATCAA RVFQLTRELG HKSDGETIEW LLQQAEPSII 180 ATTGTGTIPA NFSTLNISLR SSGSSLSAPP SKSAPHSFHG ALALTHRPHY DEGFAHSGLL 240 GFHQQPQQQQ QQHPQHHHQP HQSPLMTADE IAEALPSGGG DSGGGGGGES TENYMRKRFR 300 EDLFKDDNQE RGESGSGGGV GSPSRNKAFK GGSSCGLQLP KQQQQGEELG SYSSGVLRPS 360 NILPATAMWA VAPAPTSGAG STFWMLPVTA GSAVPSMATG TSGAGPSEAT QMWTFPSATA 420 SHVSTLQAPL HFMPRFNLPG SLEFQQAGSR GSPLQLGSML MQQQPSQHLG LGVSESNLGM 480 LAALNAYSRG GLNMNSDHQQ NHQHPLDHHQ QQHHQHQTTD SGDEGPNSSQ * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.28657 | 0.0 | leaf |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017178882.2 | 0.0 | transcription factor TCP8-like | ||||
TrEMBL | A0A498HVJ7 | 0.0 | A0A498HVJ7_MALDO; Uncharacterized protein | ||||
STRING | XP_009345828.1 | 0.0 | (Pyrus x bretschneideri) | ||||
STRING | XP_009345851.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6077 | 30 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G58100.1 | 8e-64 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000515080 |