PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000506954
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NF-YA
Protein Properties Length: 300aa    MW: 32932.2 Da    PI: 9.385
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000506954genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA101.57.9e-32144200158
      CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                    d p+YVNaKQy++Il+RRq+Rakle+++kl  k+rkpylheSRh hA++R Rg+gGrF
  MDP0000506954 144 DGPIYVNAKQYHGILRRRQSRAKLEAHNKL-LKARKPYLHESRHLHAVNRVRGTGGRF 200
                    57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.9E-35142203IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.112143203IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006166.3E-24146168IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.1E-27146200IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860148168IPR018362CCAAT-binding factor, conserved site
PRINTSPR006166.3E-24177200IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MSWNPSEQQV PQPLSKDVSF KVKFPPQVHH GSKHLGLQLQ TDQGSSSITQ SIGHSQDQCN  60
SSDSGIQTPG EVQTCGKDAE GNMKPVFLQS NQDFMLNPSQ GCVPYPYVDP YFSGFLTAYG  120
PQAMSHMLGM APTRVPLPLD LAQDGPIYVN AKQYHGILRR RQSRAKLEAH NKLLKARKPY  180
LHESRHLHAV NRVRGTGGRF LSTKRQSDQN PSSXTHHVSD SISSHQKDTG GTESNHSGSS  240
DFLPSVALHP DMTSVSNTND NFQQPDRRFS XIPPHMSGAM QFPGGFMRAG NQHCASVVR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A8e-19146213474NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.14221e-137root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018504105.10.0PREDICTED: nuclear transcription factor Y subunit A-3-like isoform X2
TrEMBLA0A498KFE50.0A0A498KFE5_MALDO; Uncharacterized protein
STRINGXP_008344031.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69493149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.15e-42nuclear factor Y, subunit A3