PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000504079
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family G2-like
Protein Properties Length: 748aa    MW: 82365.5 Da    PI: 6.0416
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000504079genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.65e-32254309156
        G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                    k+r++W+ eLH+rFv+a++qLGG+++AtPk+i+elm+v+gLt+++vkSHLQkYRl+
  MDP0000504079 254 KQRRCWSAELHRRFVDALQQLGGTQVATPKQIRELMQVEGLTNDEVKSHLQKYRLH 309
                    79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.61E-17252312IPR009057Homeodomain-like
PROSITE profilePS5129411.819253311IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-28253312IPR009057Homeodomain-like
TIGRFAMsTIGR015573.6E-26254309IPR006447Myb domain, plants
PfamPF002491.4E-7256307IPR001005SANT/Myb domain
Gene3DG3DSA:3.40.50.14402.8E-24436521IPR003008Tubulin/FtsZ, GTPase domain
SuperFamilySSF524901.37E-32436513IPR003008Tubulin/FtsZ, GTPase domain
PfamPF106444.0E-36437556IPR019605Misato Segment II tubulin-like domain
PfamPF148816.2E-19592735IPR029209DML1/Misato, tubulin domain
SuperFamilySSF524901.37E-32595738IPR003008Tubulin/FtsZ, GTPase domain
Gene3DG3DSA:3.40.50.14402.8E-24603694IPR003008Tubulin/FtsZ, GTPase domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003924Molecular FunctionGTPase activity
Sequence ? help Back to Top
Protein Sequence    Length: 748 aa     Download sequence    Send to blast
MELLSLDSSP LFVPKTITDF LAQLSAIKDG SQRSSELDGN VKRLEDELRK IEVFKRELPL  60
CMLLLRDVIE RLKEEGMRWR RXEERPVMAE FIPWKGNSEE DGGAVSGKEN IDKKNWMSSA  120
QLWSTSINVF DYTKHDSELK PGNEEDDRSA AENPIELSNK KGVGGALLAF KGQNELSGFA  180
NPRLKGDKEV TVVPNLCLMT PLMSEALAGS ANANSKTNHG CRGGGSGSGM AGQLKLQNKP  240
QQQPQQQQQQ PLRKQRRCWS AELHRRFVDA LQQLGGTQVA TPKQIRELMQ VEGLTNDEVK  300
SHLQKYRLHI RKLPPSSAAG QGNDLLVPXD HSGEHTKANN AQSGSPQGPL LAGGFAKGRS  360
TTGGESGDSR EGEEDEKSDG QMLKIIQFEI RCNKRSQLVQ VKNCVAAWPT NRLTEDCLQI  420
PSLPPVRPLL SSSGTMREIV TLQVGSFANF VGSHFWNFQD ELLGLAEDPN SDPVFKNQSL  480
NMDVLYRSGE THQGTVTYTP RLVSVDLQGS LGSMSTRGTL YDESSSASSN IYTWGGNVTT  540
QVAEPHKKNL FLXSLYEEEX VNLLTLGNGV NAGGKSCRGE IHDSDKVESL ENGVQYWTDF  600
SKVHYHPQSL YELSGLWVDP QKFDNYGIGR ESLSAGLQGE EVSERLRFFV EECDHIQGFQ  660
FIVDDSGGFS PLAVDVLESI ADEYTNAPVL LYAVRGPGSS MDPRSQKQRV SRKLHDAVSF  720
SKLSSLCKLI VPVGLPSLST SKKSCTS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.97160.0bud| fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008338274.20.0transcription factor HHO5 isoform X1
TrEMBLA0A498HXD30.0A0A498HXD3_MALDO; Uncharacterized protein
STRINGXP_008338274.10.0(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37180.14e-52G2-like family protein