PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000502194

Common Name

BZIP18

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

HB-other

Protein Properties

Length: 200aa MW: 22686.6 Da PI: 8.4796

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000502194	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.9	3.6e-18	20	78	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++++++ps +r++L +++ +++ +q+kvWFqNr +ek+ MDP0000502194 20 KYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECpilsNIEPKQIKVWFQNRXCREKQ 78 5679**************************************************99996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	14.868	15	79	IPR001356	Homeobox domain
SMART	SM00389	1.6E-13	17	83	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.48E-16	19	83	IPR009057	Homeodomain-like
CDD	cd00086	4.47E-14	20	80	No hit	No description
Pfam	PF00046	8.5E-16	21	78	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	7.4E-18	22	78	IPR009057	Homeodomain-like
CDD	cd14686	8.01E-4	72	111	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MAVTSSCKDG GMKMQMDNGK YVRYTPEQVE ALERLYHECP KPSSMRRQQL IRECPILSNI 60 EPKQIKVWFQ NRXCREKQRK EASRLQTVNR KLTAMNKLLM EENDRLQKQV SQLVYENTYF 120 RQHTQNATLA TTDTSCESVV TSGQHHLTAQ QHPPPRDASP AGLLSIAQET LAEFLSKATG 180 TAVEWVQLPG MKDEGEMGV*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.944	0.0	bud\| fruit\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Highly expressed the developing vascular elements and the adaxial portion of cotyledons. Expressed in developing ovules, stamens and carpels. Expressed in procambium and shoot meristem. {ECO:0000269\|PubMed:14701930, ECO:0000269\|PubMed:15705957}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269\|PubMed:15598805, ECO:0000269\|PubMed:15705957, ECO:0000269\|PubMed:16617092}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269\|PubMed:15773855, ECO:0000269\|PubMed:16033795, ECO:0000269\|PubMed:16617092, ECO:0000269\|PubMed:17237362}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ177427	0.0	FJ177427.1 Malus x domestica putative HB8 HD-ZipIII mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001280796.1	1e-133	homeobox-leucine zipper protein ATHB-8-like
Swissprot	Q9ZU11	1e-107	ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBL	A0A498HMJ0	1e-131	A0A498HMJ0_MALDO; Uncharacterized protein
TrEMBL	D9ZIQ6	1e-132	D9ZIQ6_MALDO; BZIP domain class transcription factor
STRING	XP_008367844.1	1e-133	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF19573	5	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52150.3	1e-110	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	MDP0000502194
Entrez Gene	103431463

Publications ? help Back to Top
Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules. Development, 2016. 143(3): p. 422-6 [PMID:26700684]