PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000497158
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 500aa    MW: 56695.9 Da    PI: 6.6345
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000497158genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.00058204220117
                    EEETTTTEEESSHHHHH CS
        zf-C2H2   1 ykCpdCgksFsrksnLk 17 
                    y+Cp+Cgk+++  + L+
  MDP0000497158 204 YVCPNCGKRYNALDALQ 220
                    9**********999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5134420.76746181IPR017919Transcription factor TFE/TFIIEalpha HTH domain
SMARTSM005319.8E-5582252IPR002853Transcription initiation factor IIE subunit alpha, N-terminal
Gene3DG3DSA:3.30.40.102.6E-20192249IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF577834.93E-9193245No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006367Biological Processtranscription initiation from RNA polymerase II promoter
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MKCKSASGGL CNRRRPLKLK GKFYRTAIRP AMLYGTECWA VKHQHVHKMG VAETRMLRGM  60
CGHTRNDKIG NEDIRGKVGV AEIEGKMREN RFRRQWVREE DLAKDLKLHS KQLRRTLRFF  120
EEEKLVTRDH RRETAKGAKM HNAAVAAXGD GPPVKEGEEK VKMHTHSYCC LDYAQIYDVV  180
RYRLHRLRKK XKDELEDKNT VQEYVCPNCG KRYNALDALQ LVSMEDEYFH CENCNGELVA  240
ESDKLASQEV VGDGDDNARR RRREKLKDLL QKMEVQLKPL MEQXNRVKDL SPPEFGSLQA  300
WEARASAARR AENGESSAMD PSKSSHGMGY GGTPMPFLGD TKVEVDFSGV EGKGKDIKSE  360
ADGTSLKVLP PWMIKQGMNL TKEQRGEVKQ EQKMDGSGSV AAPEFSEDKK FSTENNEKNI  420
QQEEEAKKEQ ETHISYGPSA VAPNRQVGMK SKREDEGEDN VDWEEAPVTG NAENYKVHDL  480
NVEADATADD EDDIDWEEG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1259264RRRREK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.26571e-117bud| cell culture| fruit| leaf| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM1675201e-127AM167520.1 Malus x domestica transposon gene for putative DNA topoisomerase II, hypothetical protein, putative CC-NBS-LRR resistance protein, and putative cyclin-related protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009346744.10.0PREDICTED: general transcription factor IIE subunit 1-like
TrEMBLA0A498JTL10.0A0A498JTL1_MALDO; Uncharacterized protein
STRINGXP_009346744.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2430811