PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000491578
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 267aa    MW: 30136.2 Da    PI: 7.9702
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000491578genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.83.4e-07828526
                   --SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                   +C +f r G+Ck  ++C+F Hg
  MDP0000491578  8 PCLYFTR-GYCKNVASCRFLHG 28
                   7999999.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902297.53E-5328IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.821330IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-5529IPR000571Zinc finger, CCCH-type
SMARTSM003560.0033529IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-5828IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MVERKWKPCL YFTRGYCKNV ASCRFLHGDG LGDAVIDGGG XVVVGSPSKL EMMDHEXLLR  60
SKTAXQHRLA ATSQLMEASA NXFPYSSKCM NFLLQQQHFL SPLXAACGLG SLISTIFLDT  120
XGIEPELCFT RILRFRETRV MRRQRKMRRV ATRRQRTRMA ITAESNLYDN VGVDHCNLYN  180
NVGVAYHRNM YDSVGVXYCN LYDNVGVANH CNMYDNVGVX YHCNLYDSVE VAYCNLYDNV  240
GVAYHCNXYD NVGVAYCNMY DSVGVA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141147RRQRKMR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-