PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000487015 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | LBD | ||||||||
Protein Properties | Length: 289aa MW: 31405.5 Da PI: 8.1087 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 92.5 | 4.8e-29 | 66 | 167 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +C++C+vlr++C++ C+l+ ++ p++q +++ +++k+FG+s +l++++a+pe++r+++++sl++eA+ r+ +Pv+Gavg++++++++++q++ MDP0000487015 66 SCNGCRVLRKGCSDTCILRSCLcwidsPEAQGNATLFLAKFFGRSDLLSFVSAVPENQRPTLFQSLLFEACGRTVNPVNGAVGLLSSGNWHVCQSA 161 6*********************9999999******************************************************************9 PP DUF260 92 aelall 97 ++++l MDP0000487015 162 VDTVLS 167 998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 17.767 | 65 | 171 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.2E-24 | 66 | 163 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MLNQRQKPDQ TPRSDGQIGS EIVAETRSRS VSPRVWKICL DKXVVGPHPM STVICKMEAD 60 RTVEMSCNGC RVLRKGCSDT CILRSCLCWI DSPEAQGNAT LFLAKFFGRS DLLSFVSAVP 120 ENQRPTLFQS LLFEACGRTV NPVNGAVGLL SSGNWHVCQS AVDTVLSGGA LRPLPAFTTP 180 ALDESSDAFS RGACTPKNRY CPSAAAYYDA ERIQPFEAAG LSLRPNLVAA ERGRGKGMWI 240 CVSAAMDQRR RDTVSFDSEE SVMTTTTTRT FESGGGDLKD RKLLNLFV* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.23857 | 1e-113 | root |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008377972.1 | 1e-164 | LOB domain-containing protein 37-like | ||||
TrEMBL | A0A498J9U7 | 1e-163 | A0A498J9U7_MALDO; Uncharacterized protein | ||||
STRING | XP_008365099.1 | 1e-164 | (Malus domestica) | ||||
STRING | XP_008377972.1 | 1e-164 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF721 | 34 | 136 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 1e-61 | LOB domain-containing protein 38 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000487015 |